IMOD

[root@c ~]# cd /Appl/src/
[root@c src]# curl -O http://bio3d.colorado.edu/imod/AMD64-RHEL5/imod_4.9.4_RHEL5-64_CUDA3.0.sh
 
[root@c src]# bash ./imod_4.9.4_RHEL5-64_CUDA3.0.sh -h
This is a self-installing IMOD package which will install IMOD in a default
or specified location and set up startup files.
Options can be added after the name of the package on the command line.
Options may be abbreviated.  The options are:
  -dir dir     Install IMOD within the given directory.  The directory must
                 exist (unless -name is entered also) and you must have
                 permission to write to it.
  -name dir    Rename the IMOD directory to the given name.  The script will
                 automatically remove an existing version by this name and not
                 offer to clean up of other versions
  -extract     Just extract the package and the real IMOD install script into
                 a directory named IMODtempDir, without installing
  -script dir  Place the IMOD startup scripts in the given directory.  On Linux
                 and Windows, scripts will be copied there instead of to
                 /etc/profile.d.  On Mac, scripts will be copied there
                 and the system startup files will not be modified.
  -skip        Skip copying startup scripts (Linux and Windows) or modifying
                  system startup files (Mac)
  -debian      Modify /etc/csh.cshrc and /etc/bash.bashrc instead of
                  copying startup scripts to /etc/profile.d
                   - this option is set automatically for Ubuntu versions < 10
  -yes         Install this version and remove old versions without asking for
                  confirmation
  -test        Run this self-installing script but not the real install script
  -h, --help   Print this help
[root@c src]#

[root@c src]# bash ./imod_4.9.4_RHEL5-64_CUDA3.0.sh -dir /Appl  -script /Appl
 
This script will install IMOD in /Appl and rename
any previous version, or remove another copy of this version.
 
It will copy IMOD-linux.csh and IMOD-linux.sh to /Appl
 
You can add the option -h to see a full list of options
 
Enter Y if you want to proceed: y
Extracting imod_4.9.4_RHEL5-64_CUDA3.0.tar.gz ...
Extracting installIMOD
Checking system and package types
Unpacking IMOD in /Appl ...
Linking imod_4.9.4 to IMOD
Editing startup scripts for custom install location
Copying startup scripts to /Appl: IMOD-linux.csh IMOD-linux.sh
 
The installation of IMOD 4.9.4 is complete.
You may need to start a new terminal window for changes to take effect
 
If there are version-specific IMOD startup commands in individual user
 startup files (.cshrc, .bashrc, .bash_profile) they should be changed
 or removed.
 
Cleaning up imod_4.9.4_RHEL5-64_CUDA3.0.tar.gz, installIMOD, and IMODtempDir
[root@c src]#

dnf groupinstall "Java Platform"

alternatives --config python

update-alternatives --install /usr/bin/python python /usr/bin/python3 1
apt install openjdk-11-jdk