SpliceAI

[root@rockylinux ~]# export PYENV_ROOT=/apps/pyenv
[root@rockylinux ~]# export PATH=$PYENV_ROOT/bin:$PATH
[root@rockylinux ~]# export PATH=$PYENV_ROOT/versions/anaconda3-2023.03/bin/:$PATH
 
[root@rockylinux ~]# conda create -n spliceai
 
[root@rockylinux ~]# source activate spliceai
 
(spliceai) [root@rockylinux ~]# 
(spliceai) [root@rockylinux ~]# conda install -c bioconda spliceai

(spliceai) [root@rockylinux ~]# conda list
# packages in environment at /apps/pyenv/versions/anaconda3-2023.03/envs/spliceai:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main
_openmp_mutex             5.1                       1_gnu
_tflow_select             2.3.0                       mkl
absl-py                   0.15.0             pyhd3eb1b0_0
astor                     0.8.1            py37h06a4308_0
blas                      1.0                         mkl
bottleneck                1.3.5            py37h7deecbd_0
bzip2                     1.0.8                h7b6447c_0
c-ares                    1.19.0               h5eee18b_0
ca-certificates           2023.01.10           h06a4308_0
certifi                   2022.12.7        py37h06a4308_0
curl                      7.88.1               h5eee18b_0
fftw                      3.3.9                h27cfd23_1
flit-core                 3.6.0              pyhd3eb1b0_0
gast                      0.2.2                    py37_0
google-pasta              0.2.0              pyhd3eb1b0_0
grpcio                    1.42.0           py37hce63b2e_0
h5py                      3.7.0            py37h737f45e_0
hdf5                      1.10.6               h3ffc7dd_1
importlib-metadata        4.11.3           py37h06a4308_0
intel-openmp              2021.4.0          h06a4308_3561
keras                     2.3.1                         0
keras-applications        1.0.8                      py_1
keras-base                2.3.1                    py37_0
keras-preprocessing       1.1.2              pyhd3eb1b0_0
krb5                      1.19.4               h568e23c_0
ld_impl_linux-64          2.38                 h1181459_1
libcurl                   7.88.1               h91b91d3_0
libdeflate                1.0                  h14c3975_1    bioconda
libedit                   3.1.20221030         h5eee18b_0
libev                     4.33                 h7f8727e_1
libffi                    3.4.4                h6a678d5_0
libgcc-ng                 11.2.0               h1234567_1
libgfortran-ng            11.2.0               h00389a5_1
libgfortran5              11.2.0               h1234567_1
libgomp                   11.2.0               h1234567_1
libnghttp2                1.46.0               hce63b2e_0
libprotobuf               3.20.3               he621ea3_0
libssh2                   1.10.0               h8f2d780_0
libstdcxx-ng              11.2.0               h1234567_1
markdown                  3.4.1            py37h06a4308_0
mkl                       2021.4.0           h06a4308_640
mkl-service               2.4.0            py37h7f8727e_0
mkl_fft                   1.3.1            py37hd3c417c_0
mkl_random                1.2.2            py37h51133e4_0
ncurses                   6.4                  h6a678d5_0
numexpr                   2.8.4            py37he184ba9_0
numpy                     1.21.5           py37h6c91a56_3
numpy-base                1.21.5           py37ha15fc14_3
openssl                   1.1.1t               h7f8727e_0
opt_einsum                3.3.0              pyhd3eb1b0_1
packaging                 22.0             py37h06a4308_0
pandas                    1.3.5            py37h8c16a72_0
pip                       22.3.1           py37h06a4308_0
protobuf                  3.20.3           py37h6a678d5_0
pyfaidx                   0.7.0              pyh5e36f6f_0    bioconda
pysam                     0.15.3           py37hda2845c_1    bioconda
python                    3.7.16               h7a1cb2a_0
python-dateutil           2.8.2              pyhd3eb1b0_0
pytz                      2022.7           py37h06a4308_0
pyyaml                    6.0              py37h5eee18b_1
readline                  8.2                  h5eee18b_0
scipy                     1.7.3            py37h6c91a56_2
setuptools                65.6.3           py37h06a4308_0
six                       1.16.0             pyhd3eb1b0_1
spliceai                  1.3.1              pyh864c0ab_1    bioconda
sqlite                    3.41.2               h5eee18b_0
tensorboard               2.0.0              pyhb38c66f_1
tensorflow                2.0.0           mkl_py37h66b46cc_0
tensorflow-base           2.0.0           mkl_py37h9204916_0
tensorflow-estimator      2.6.0              pyh7b7c402_0
termcolor                 1.1.0            py37h06a4308_1
tk                        8.6.12               h1ccaba5_0
typing_extensions         4.4.0            py37h06a4308_0
werkzeug                  0.16.1                     py_0
wheel                     0.38.4           py37h06a4308_0
wrapt                     1.14.1           py37h5eee18b_0
xz                        5.2.10               h5eee18b_1
yaml                      0.2.5                h7b6447c_0
zipp                      3.11.0           py37h06a4308_0
zlib                      1.2.13               h5eee18b_0
(spliceai) [root@rockylinux ~]#

conda create -n spliceai
conda activate spliceai
conda install python==3.7.16 keras==2.3.1 absl-py==0.15.0 tensorboard==2.0.0
conda install spliceai
conda install h5py=2