本家様 https://github.com/bpowell122/tomodrgn
インストール方法https://bpowell122.github.io/tomodrgn/overview/installation.html
[root@rockylinux8 ~]# cat /etc/redhat-release
Rocky Linux release 8.10 (Green Obsidian)
[root@rockylinux8 ~]# cat /proc/driver/nvidia/version
NVRM version: NVIDIA UNIX x86_64 Kernel Module 550.135 Thu Nov 14 00:09:29 UTC 2024
GCC version: gcc version 8.5.0 20210514 (Red Hat 8.5.0-22) (GCC)
[root@rockylinux8 ~]# nvidia-smi -L
GPU 0: NVIDIA GeForce GTX 1070 (UUID: GPU-a49de51b-de1e-52f3-1e3f-ce704e159713)
[root@rockylinux8 ~]#
git clone https://github.com/yyuu/pyenv.git /apps/pyenv
export PYENV_ROOT=/apps/pyenv
export PATH=$PYENV_ROOT/bin:$PATH
pyenv install anaconda3-2024.10-1
[root@rockylinux8 ~]# source /apps/pyenv/versions/anaconda3-2024.10-1/etc/profile.d/conda.sh
[root@rockylinux8 ~]# conda create --name tomodrgn "python>=3.10, <3.13" -y
[root@rockylinux8 ~]# conda activate tomodrgn
(tomodrgn) [root@rockylinux8 ~]#
(tomodrgn) [root@rockylinux8 ~]# cd /apps/src/
(tomodrgn) [root@rockylinux8 src]# git clone https://github.com/bpowell122/tomodrgn.git
(tomodrgn) [root@rockylinux8 src]# cd tomodrgn
(tomodrgn) [root@rockylinux8 tomodrgn]# git log -1
commit 066dc934c0257d667827f7f7deb9bdb5e57f9f9d (HEAD -> master, origin/master, origin/HEAD)
Author: bpowell122 <bmp@mit.edu>
Date: Tue Nov 26 14:04:36 2024 -0500
bugfix prefix_paths when no parent directory contained in path to images
(tomodrgn) [root@rockylinux8 tomodrgn]#
(tomodrgn) [root@rockylinux8 tomodrgn]# python -m pip install .
(tomodrgn) [root@rockylinux8 tomodrgn]# tomodrgn --version
tomoDRGN v1.0.1.dev1
(tomodrgn) [root@rockylinux8 tomodrgn]#
(tomodrgn) [root@rockylinux8 tomodrgn]# conda list
:
jupyterlab 4.3.2 pypi_0 pypi
:
matplotlib 3.9.3 pypi_0 pypi
:
numpy 1.26.4 pypi_0 pypi
:
python 3.12.7 h5148396_0
:
torch 2.5.1 pypi_0 pypi
:
(tomodrgn) [root@rockylinux8 tomodrgn]# conda deactivate
[root@rockylinux8 tomodrgn]#
「/apps/modulefiles/tomoDRGN」
#%Module1.0
set root /apps/pyenv/versions/anaconda3-2024.10-1/envs/tomodrgn
prepend-path PATH $root/bin