![[PukiWiki]](image/picc.png "[PukiWiki]")
#author("2026-03-18T15:36:18+00:00","default:sysosa","sysosa") #author("2026-03-18T15:37:40+00:00","default:sysosa","sysosa") 本家様 [[https://github.com/ando-lab/miffi>+https://github.com/ando-lab/miffi]] pipy[[https://pypi.org/project/miffi/>+https://pypi.org/project/miffi/]] Cryo-EM micrograph filtering utilizing Fourier space information 各自のホームディレクトリに各種pythonアプリの実行環境を用意するのではなく、rootで一元管理させるために「pyenv-conda」を使ってます. pyenvでOS提供のpython環境から離れ、そのpyenv上にconda環境を独自に敷いてます ここでは「/apps/pyenv」を起点としています #code(nonumber){{ git clone https://github.com/yyuu/pyenv.git /apps/pyenv export PYENV_ROOT=/apps/pyenv export PATH=$PYENV_ROOT/bin:$PATH pyenv install miniforge3-26.1.0-0 source /apps/pyenv/versions/miniforge3-26.1.0-0/etc/profile.d/conda.sh conda update -n base -c conda-forge conda }} 既にpyenv/conda 環境があるなら #code(nonumber){{ source /apps/pyenv/versions/<conda>/etc/profile.d/conda.sh }} として「pyenv-conda」環境を整備します っで、 #code(nonumber){{ conda create -n miffi python=3.9 conda activate miffi cd /apps/src git clone https://github.com/ando-lab/miffi.git cd miffi pip install . mkdir /apps/miffi miffi download -d /apps/miffi conda deactivate }} Environment-modules 「/apps/modulefiles/miffi」 #code(nonumber){{ #%Module set root /apps/pyenv/versions/miniforge3-26.1.0-0/envs/miffi prepend-path PATH $root/bin prepend-path LD_LIBRARY_PATH $root/lib }} 一応conda list #code(nonumber){{ # packages in environment at /apps/pyenv/versions/miniforge3-26.1.0-0/envs/miffi: # # Name Version Build Channel _openmp_mutex 4.5 20_gnu conda-forge annotated-doc 0.0.4 pypi_0 pypi anyio 4.12.1 pypi_0 pypi argon2-cffi 25.1.0 pypi_0 pypi argon2-cffi-bindings 25.1.0 pypi_0 pypi arrow 1.4.0 pypi_0 pypi asttokens 3.0.1 pypi_0 pypi async-lru 2.0.5 pypi_0 pypi attrs 25.4.0 pypi_0 pypi babel 2.18.0 pypi_0 pypi beautifulsoup4 4.14.3 pypi_0 pypi bleach 6.2.0 pypi_0 pypi bzip2 1.0.8 hda65f42_9 conda-forge ca-certificates 2026.2.25 hbd8a1cb_0 conda-forge certifi 2026.2.25 pypi_0 pypi cffi 2.0.0 pypi_0 pypi charset-normalizer 3.4.6 pypi_0 pypi click 8.1.8 pypi_0 pypi comm 0.2.3 pypi_0 pypi contourpy 1.3.0 pypi_0 pypi cycler 0.12.1 pypi_0 pypi debugpy 1.8.20 pypi_0 pypi decorator 5.2.1 pypi_0 pypi defusedxml 0.7.1 pypi_0 pypi exceptiongroup 1.3.1 pypi_0 pypi executing 2.2.1 pypi_0 pypi fastjsonschema 2.21.2 pypi_0 pypi filelock 3.19.1 pypi_0 pypi fonttools 4.60.2 pypi_0 pypi fqdn 1.5.1 pypi_0 pypi fsspec 2025.10.0 pypi_0 pypi h11 0.16.0 pypi_0 pypi hf-xet 1.4.2 pypi_0 pypi httpcore 1.0.9 pypi_0 pypi httpx 0.28.1 pypi_0 pypi huggingface-hub 1.7.1 pypi_0 pypi icu 78.3 h33c6efd_0 conda-forge idna 3.11 pypi_0 pypi importlib-metadata 8.7.1 pypi_0 pypi importlib-resources 6.5.2 pypi_0 pypi ipykernel 6.31.0 pypi_0 pypi ipython 8.18.1 pypi_0 pypi ipywidgets 8.1.8 pypi_0 pypi isoduration 20.11.0 pypi_0 pypi jedi 0.19.2 pypi_0 pypi jinja2 3.1.6 pypi_0 pypi json5 0.13.0 pypi_0 pypi jsonpointer 3.0.0 pypi_0 pypi jsonschema 4.25.1 pypi_0 pypi jsonschema-specifications 2025.9.1 pypi_0 pypi jupyter-client 8.6.3 pypi_0 pypi jupyter-core 5.8.1 pypi_0 pypi jupyter-events 0.12.0 pypi_0 pypi jupyter-lsp 2.3.0 pypi_0 pypi jupyter-server 2.17.0 pypi_0 pypi jupyter-server-terminals 0.5.4 pypi_0 pypi jupyterlab 4.5.6 pypi_0 pypi jupyterlab-pygments 0.3.0 pypi_0 pypi jupyterlab-server 2.28.0 pypi_0 pypi jupyterlab-widgets 3.0.16 pypi_0 pypi kiwisolver 1.4.7 pypi_0 pypi lark 1.3.1 pypi_0 pypi ld_impl_linux-64 2.45.1 default_hbd61a6d_101 conda-forge libexpat 2.7.4 hecca717_0 conda-forge libffi 3.5.2 h3435931_0 conda-forge libgcc 15.2.0 he0feb66_18 conda-forge libgcc-ng 15.2.0 h69a702a_18 conda-forge libgomp 15.2.0 he0feb66_18 conda-forge liblzma 5.8.2 hb03c661_0 conda-forge libnsl 2.0.1 hb9d3cd8_1 conda-forge libsqlite 3.52.0 hf4e2dac_0 conda-forge libstdcxx 15.2.0 h934c35e_18 conda-forge libuuid 2.41.3 h5347b49_0 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libzlib 1.3.1 hb9d3cd8_2 conda-forge markdown-it-py 3.0.0 pypi_0 pypi markupsafe 3.0.3 pypi_0 pypi matplotlib 3.9.4 pypi_0 pypi matplotlib-inline 0.2.1 pypi_0 pypi mdurl 0.1.2 pypi_0 pypi miffi 1.0.2.dev5+g697c72545 pypi_0 pypi mistune 3.2.0 pypi_0 pypi mpmath 1.3.0 pypi_0 pypi mrcfile 1.5.4 pypi_0 pypi nbclient 0.10.2 pypi_0 pypi nbconvert 7.17.0 pypi_0 pypi nbformat 5.10.4 pypi_0 pypi ncurses 6.5 h2d0b736_3 conda-forge nest-asyncio 1.6.0 pypi_0 pypi networkx 3.2.1 pypi_0 pypi notebook-shim 0.2.4 pypi_0 pypi numpy 2.0.2 pypi_0 pypi nvidia-cublas-cu12 12.8.4.1 pypi_0 pypi nvidia-cuda-cupti-cu12 12.8.90 pypi_0 pypi nvidia-cuda-nvrtc-cu12 12.8.93 pypi_0 pypi nvidia-cuda-runtime-cu12 12.8.90 pypi_0 pypi nvidia-cudnn-cu12 9.10.2.21 pypi_0 pypi nvidia-cufft-cu12 11.3.3.83 pypi_0 pypi nvidia-cufile-cu12 1.13.1.3 pypi_0 pypi nvidia-curand-cu12 10.3.9.90 pypi_0 pypi nvidia-cusolver-cu12 11.7.3.90 pypi_0 pypi nvidia-cusparse-cu12 12.5.8.93 pypi_0 pypi nvidia-cusparselt-cu12 0.7.1 pypi_0 pypi nvidia-nccl-cu12 2.27.3 pypi_0 pypi nvidia-nvjitlink-cu12 12.8.93 pypi_0 pypi nvidia-nvtx-cu12 12.8.90 pypi_0 pypi openssl 3.6.1 h35e630c_1 conda-forge overrides 7.7.0 pypi_0 pypi packaging 26.0 pypi_0 pypi pandas 2.3.3 pypi_0 pypi pandocfilters 1.5.1 pypi_0 pypi parso 0.8.6 pypi_0 pypi pexpect 4.9.0 pypi_0 pypi pillow 11.3.0 pypi_0 pypi pip 25.2 pyh8b19718_0 conda-forge platformdirs 4.4.0 pypi_0 pypi prometheus-client 0.24.1 pypi_0 pypi prompt-toolkit 3.0.52 pypi_0 pypi psutil 7.2.2 pypi_0 pypi ptyprocess 0.7.0 pypi_0 pypi pure-eval 0.2.3 pypi_0 pypi pyarrow 21.0.0 pypi_0 pypi pycparser 2.23 pypi_0 pypi pygments 2.19.2 pypi_0 pypi pyparsing 3.3.2 pypi_0 pypi python 3.9.23 hc30ae73_0_cpython conda-forge python-dateutil 2.9.0.post0 pypi_0 pypi python-json-logger 4.0.0 pypi_0 pypi pytz 2026.1.post1 pypi_0 pypi pyyaml 6.0.3 pypi_0 pypi pyzmq 27.1.0 pypi_0 pypi readline 8.3 h853b02a_0 conda-forge referencing 0.36.2 pypi_0 pypi requests 2.32.5 pypi_0 pypi rfc3339-validator 0.1.4 pypi_0 pypi rfc3986-validator 0.1.1 pypi_0 pypi rfc3987-syntax 1.1.0 pypi_0 pypi rich 14.3.3 pypi_0 pypi rpds-py 0.27.1 pypi_0 pypi safetensors 0.7.0 pypi_0 pypi send2trash 2.1.0 pypi_0 pypi setuptools 80.9.0 pyhff2d567_0 conda-forge shellingham 1.5.4 pypi_0 pypi six 1.17.0 pypi_0 pypi soupsieve 2.8.3 pypi_0 pypi stack-data 0.6.3 pypi_0 pypi starfile 0.5.13 pypi_0 pypi sympy 1.14.0 pypi_0 pypi terminado 0.18.1 pypi_0 pypi timm 1.0.25 pypi_0 pypi tinycss2 1.4.0 pypi_0 pypi tk 8.6.13 noxft_h366c992_103 conda-forge tomli 2.4.0 pypi_0 pypi torch 2.8.0 pypi_0 pypi torchvision 0.23.0 pypi_0 pypi tornado 6.5.5 pypi_0 pypi tqdm 4.67.3 pypi_0 pypi traitlets 5.14.3 pypi_0 pypi triton 3.4.0 pypi_0 pypi typer 0.23.2 pypi_0 pypi typing-extensions 4.15.0 pypi_0 pypi tzdata 2025.3 pypi_0 pypi uri-template 1.3.0 pypi_0 pypi urllib3 2.6.3 pypi_0 pypi wcwidth 0.6.0 pypi_0 pypi webcolors 24.11.1 pypi_0 pypi webencodings 0.5.1 pypi_0 pypi websocket-client 1.9.0 pypi_0 pypi wheel 0.45.1 pyhd8ed1ab_1 conda-forge widgetsnbextension 4.0.15 pypi_0 pypi zipp 3.23.0 pypi_0 pypi zstd 1.5.7 hb78ec9c_6 conda-forge }}
