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#author("2026-06-03T18:34:25+00:00","default:sysosa","sysosa") github [[https://github.com/TeletcheaLab/protGPT2>+https://github.com/TeletcheaLab/protGPT2]] #code(nonumber){{ root@ubuntu24:~# conda create -n ProtGPT2 pip root@ubuntu24:~# conda activate ProtGPT2 (ProtGPT2) root@ubuntu24:~# (ProtGPT2) root@ubuntu24:~# pip install transformers datasets torch (ProtGPT2) root@ubuntu24:~# conda list # packages in environment at /apps/pyenv/versions/miniforge3-26.3.2-1/envs/ProtGPT2: # # Name Version Build Channel _openmp_mutex 4.5 20_gnu conda-forge aiohappyeyeballs 2.6.2 pypi_0 pypi aiohttp 3.14.0 pypi_0 pypi aiosignal 1.4.0 pypi_0 pypi annotated-doc 0.0.4 pypi_0 pypi anyio 4.13.0 pypi_0 pypi attrs 26.1.0 pypi_0 pypi bzip2 1.0.8 hda65f42_9 conda-forge ca-certificates 2026.5.20 hbd8a1cb_0 conda-forge certifi 2026.5.20 pypi_0 pypi charset-normalizer 3.4.7 pypi_0 pypi click 8.4.1 pypi_0 pypi cuda-bindings 13.3.1 pypi_0 pypi cuda-pathfinder 1.5.5 pypi_0 pypi cuda-toolkit 13.0.2 pypi_0 pypi datasets 4.8.5 pypi_0 pypi dill 0.4.1 pypi_0 pypi filelock 3.29.1 pypi_0 pypi frozenlist 1.8.0 pypi_0 pypi fsspec 2026.2.0 pypi_0 pypi h11 0.16.0 pypi_0 pypi hf-xet 1.5.0 pypi_0 pypi httpcore 1.0.9 pypi_0 pypi httpx 0.28.1 pypi_0 pypi huggingface-hub 1.17.0 pypi_0 pypi idna 3.18 pypi_0 pypi jinja2 3.1.6 pypi_0 pypi ld_impl_linux-64 2.45.1 default_hbd61a6d_102 conda-forge libexpat 2.8.1 hecca717_0 conda-forge libffi 3.5.2 h3435931_0 conda-forge libgcc 15.2.0 he0feb66_19 conda-forge libgomp 15.2.0 he0feb66_19 conda-forge liblzma 5.8.3 hb03c661_0 conda-forge libmpdec 4.0.0 hb03c661_1 conda-forge libsqlite 3.53.1 h0c1763c_0 conda-forge libuuid 2.42.1 h5347b49_0 conda-forge libzlib 1.3.2 h25fd6f3_2 conda-forge markdown-it-py 4.2.0 pypi_0 pypi markupsafe 3.0.3 pypi_0 pypi mdurl 0.1.2 pypi_0 pypi mpmath 1.3.0 pypi_0 pypi multidict 6.7.1 pypi_0 pypi multiprocess 0.70.19 pypi_0 pypi ncurses 6.6 hdb14827_0 conda-forge networkx 3.6.1 pypi_0 pypi numpy 2.4.6 pypi_0 pypi nvidia-cublas 13.1.1.3 pypi_0 pypi nvidia-cuda-cupti 13.0.85 pypi_0 pypi nvidia-cuda-nvrtc 13.0.88 pypi_0 pypi nvidia-cuda-runtime 13.0.96 pypi_0 pypi nvidia-cudnn-cu13 9.20.0.48 pypi_0 pypi nvidia-cufft 12.0.0.61 pypi_0 pypi nvidia-cufile 1.15.1.6 pypi_0 pypi nvidia-curand 10.4.0.35 pypi_0 pypi nvidia-cusolver 12.0.4.66 pypi_0 pypi nvidia-cusparse 12.6.3.3 pypi_0 pypi nvidia-cusparselt-cu13 0.8.1 pypi_0 pypi nvidia-nccl-cu13 2.29.7 pypi_0 pypi nvidia-nvjitlink 13.0.88 pypi_0 pypi nvidia-nvshmem-cu13 3.4.5 pypi_0 pypi nvidia-nvtx 13.0.85 pypi_0 pypi openssl 3.6.2 h35e630c_0 conda-forge packaging 26.2 pypi_0 pypi pandas 3.0.3 pypi_0 pypi pip 26.1.2 pyh145f28c_0 conda-forge propcache 0.5.2 pypi_0 pypi pyarrow 24.0.0 pypi_0 pypi pygments 2.20.0 pypi_0 pypi python 3.14.5 habeac84_100_cp314 conda-forge python-dateutil 2.9.0.post0 pypi_0 pypi python_abi 3.14 8_cp314 conda-forge pyyaml 6.0.3 pypi_0 pypi readline 8.3 h853b02a_0 conda-forge regex 2026.5.9 pypi_0 pypi requests 2.34.2 pypi_0 pypi rich 15.0.0 pypi_0 pypi safetensors 0.7.0 pypi_0 pypi setuptools 81.0.0 pypi_0 pypi shellingham 1.5.4 pypi_0 pypi six 1.17.0 pypi_0 pypi sympy 1.14.0 pypi_0 pypi tk 8.6.13 noxft_h366c992_103 conda-forge tokenizers 0.22.2 pypi_0 pypi torch 2.12.0 pypi_0 pypi tqdm 4.67.3 pypi_0 pypi transformers 5.10.1 pypi_0 pypi triton 3.7.0 pypi_0 pypi typer 0.25.1 pypi_0 pypi typing-extensions 4.15.0 pypi_0 pypi tzdata 2025c hc9c84f9_1 conda-forge urllib3 2.7.0 pypi_0 pypi xxhash 3.7.0 pypi_0 pypi yarl 1.24.2 pypi_0 pypi zstd 1.5.7 hb78ec9c_6 conda-forge (ProtGPT2) root@ubuntu24:~# (ProtGPT2) root@ubuntu24:~# conda deactivate root@ubuntu24:~# vi /apps/modulefiles/ProtGPT2 #%Module set root /apps/pyenv/versions/miniforge3-26.3.2-1/envs/ProtGPT2 prepend-path PATH $root/bin prepend-path LD_LIBRARY_PATH PATH $root/lib root@ubuntu24:~# }} #code(nonumber){{ saber@ubuntu24:~$ module load ProtGPT2 saber@ubuntu24:~$ python Python 3.14.5 | packaged by conda-forge | (main, May 20 2026, 00:15:36) [GCC 14.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> >>> from transformers import pipeline >>> generator = pipeline('text-generation', model='nferruz/ProtGPT2') >>> sequences = generator("M", max_length=50, num_return_sequences=3) >>> for seq in sequences: ... print(seq['generated_text']) ... M M M >>> }}
