coot/source/v1

--- coot/build-it-3-3   2026-08-24 01:22:46.035300747 +0900
+++ build-it-3-3        2026-08-23 16:35:28.454535563 +0900
@@ -1053,7 +1053,7 @@
          if test -e /etc/os-release ; then
              # 20240914 strip quote marks also now
              dist_name=$(grep ^ID= /etc/os-release | sed -e 's/ID=//' -e 's/"//g')
-             dist_ver=$(grep ^VERSION_ID /etc/os-release | sed -e 's/VERSION_ID=//')
+             dist_ver=$(grep ^VERSION_ID /etc/os-release | sed -e 's/VERSION_ID=//' -e 's/"//g')
          else
              for i in fedora-release redhat-release redhat-release-workstation centos-release sl-release openSUSE-release ; do
                  rpm -q --qf '%{name}' ${i}
@@ -2737,6 +2737,7 @@
        patch -p0 < ${AUTOBUILD_SOURCES}/readline-5.1.patch
     fi
     do_the_sed=no
+    if [ "$dist_name" = rocky     ] ; then do_the_sed=yes ; fi
     if [ "$dist_name" = arch      ] ; then do_the_sed=yes ; fi
     if [ "$dist_name" = almalinux ] ; then do_the_sed=yes ; fi
     if [ "$dist_name" = ubuntu    ] ; then do_the_sed=yes ; fi
@@ -2873,7 +2874,7 @@
    fi
 else
    # what about rocky here also?
-   if test "$dist_name" = fedora ; then
+   if [ "$dist_name" = fedora ] || [ "$dist_name" = rocky ] ; then
        if [ -e $install_top_dir/include/openssl ] ; then
            build_openssl=false
        else
@@ -2977,7 +2978,7 @@
    # remove --with-pydebug for now because __PyNegativeRefcount problem on trying to load this into Blender
    #
    # do we also need to use --with-threads=dir?
-   if test "$dist_name" = fedora ; then
+   if [ "$dist_name" = fedora ] || [ "$dist_name" = rocky ] ; then
        python_install_top_dir=$HOME/building-python
        python_install_top_dir=$HOME/building-python-tt
        python_install_top_dir=$install_top_dir
@@ -4184,7 +4185,7 @@
               if test "$dist_name" = almalinux ; then
                   echo don.t mess with LDFLAGS on almalinux
               else
-                 if test "$dist_name" = arch ; then
+                 if [ "$dist_name" = arch ] || [ "$dist_name" = rocky ] ; then
                      echo don.t mess with LDFLAGS here on arch
                   else
                       export LDFLAGS="-L$install_top_dir/lib -lintl"
@@ -5163,7 +5164,7 @@
 # 20220707-PE does this improve thie linking (get pass the problem with g_module_open_full)?
 # We get checking dynamic linker characteristics... awk: symbol lookup error: /home/pemsley/autobuild/Linux-emsley-vm-fedora-2.lmb.internal-gtk4/lib/libreadline.so.8: undefined symbol: UP
 # on fedora if LD_LIBRARY_PATH is set
-if [ "$dist_name" = fedora ] ;  then
+if [ "$dist_name" = fedora ] || [ "$dist_name" = rocky ] ;  then
     :
 else
     if [ "$dist_name" = arch ] ;  then
@@ -5184,8 +5185,9 @@
 
 echo bash ../coot/configure $coot_prefix \
       --with-fftw-prefix=$install_top_dir  \
-      COOT_BUILD_INFO_STRING="$coot_build_info_string" \
       SHELL=/bin/bash \
+      GEMMI_CXXFLAGS="-I/apps/coot-1.3.3/include" \
+      GEMMI_LIBS="-L/apps/coot-1.3.3/lib64 -lgemmi_cpp" \
       PYTHON=python3 \
       --with-boost=$install_top_dir  \
       --with-boost-libdir=$install_top_dir/lib  \
@@ -5200,8 +5202,9 @@
    bash ../coot/configure $coot_prefix \
       --with-fftw-prefix=$install_top_dir  \
       SHELL=/bin/bash \
+      GEMMI_CXXFLAGS="-I/apps/coot-1.3.3/include" \
+      GEMMI_LIBS="-L/apps/coot-1.3.3/lib64 -lgemmi_cpp" \
       PYTHON=python3 \
-      COOT_BUILD_INFO_STRING="$coot_build_info_string" \
       --with-boost=$install_top_dir  \
       --with-boost-libdir=$install_top_dir/lib  \
       --with-rdkit-prefix=$install_top_dir \
@@ -5391,8 +5394,8 @@
                  tar xzf $holding_tar_file
                  echo cding into `basename $slim_dir`  from `pwd`
                   cd `basename $slim_dir`
-                 echo ln -s ../../$coot_dir_name/greg-tests .
-                 ln -s ../../$coot_dir_name/greg-tests .
+                  echo mkdir greg-tests
+                  mkdir greg-tests
                   echo second coot test...
                   echo running second test... >&2
                  test_coot bin/coot > $LOGS/test-2.log 2>&1