(cryolo-1.8.0-c11) root@ubuntu:~/cryolo# cryolo_predict.py -c config_cryolo_.json -w /mnt/gmodel_phosnet_202005_N63_c17.h5 -i test*.mrc -o ./
2021-12-27 21:09:46.172254: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
WARNING:root:Limited tf.compat.v2.summary API due to missing TensorBoard installation.
Using TensorFlow backend.
2021-12-27 21:09:46.665517: I tensorflow/core/platform/cpu_feature_guard.cc:145] Your CPU supports instructions that this TensorFlow binary was not compiled to use: SSE4.1 SSE4.2 AVX
2021-12-27 21:09:46.669201: I tensorflow/core/platform/profile_utils/cpu_utils.cc:94] CPU Frequency: 3792000000 Hz
2021-12-27 21:09:46.669367: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x55734762d560 initialized for platform Host (this does not guarantee that XLA will be used). Devices:
2021-12-27 21:09:46.669414: I tensorflow/compiler/xla/service/service.cc:176] StreamExecutor device (0): Host, Default Version
2021-12-27 21:09:46.670672: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
2021-12-27 21:09:47.075740: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:1082] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2021-12-27 21:09:47.075920: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x55734747b6a0 initialized for platform CUDA (this does not guarantee that XLA will be used). Devices:
2021-12-27 21:09:47.075969: I tensorflow/compiler/xla/service/service.cc:176] StreamExecutor device (0): NVIDIA RTX A2000, Compute Capability 8.6
2021-12-27 21:09:47.076130: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:1082] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2021-12-27 21:09:47.076266: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1666] Found device 0 with properties:
name: NVIDIA RTX A2000 major: 8 minor: 6 memoryClockRate(GHz): 1.2
pciBusID: 0000:0b:00.0
2021-12-27 21:09:47.076386: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2021-12-27 21:09:47.078845: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
2021-12-27 21:09:47.096837: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
2021-12-27 21:09:47.097060: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
2021-12-27 21:09:47.097536: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.11
2021-12-27 21:09:47.099335: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
2021-12-27 21:09:47.099487: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2021-12-27 21:09:47.099594: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:1082] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2021-12-27 21:09:47.099758: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:1082] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2021-12-27 21:09:47.099877: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1794] Adding visible gpu devices: 0
2021-12-27 21:09:47.099946: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2021-12-27 21:09:47.299591: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1206] Device interconnect StreamExecutor with strength 1 edge matrix:
2021-12-27 21:09:47.299688: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1212] 0
2021-12-27 21:09:47.299723: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1225] 0: N
2021-12-27 21:09:47.299907: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:1082] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2021-12-27 21:09:47.300102: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:1082] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero
2021-12-27 21:09:47.300240: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1351] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 3904 MB memory) -> physical GPU (device: 0, name: NVIDIA RTX A2000, pci bus id: 0000:0b:00.0, compute capability: 8.6)
/apps/pyenv/versions/anaconda3-5.3.1/envs/cryolo-1.8.0-c11/lib/python3.8/site-packages/mrcfile/mrcinterpreter.py:209: RuntimeWarning: Map ID string not found - not an MRC file, or file is corrupt
warnings.warn(msg, RuntimeWarning)
/apps/pyenv/versions/anaconda3-5.3.1/envs/cryolo-1.8.0-c11/lib/python3.8/site-packages/mrcfile/mrcinterpreter.py:219: RuntimeWarning: Unrecognised machine stamp: 0x00 0x00 0x00 0x00
warnings.warn(str(err), RuntimeWarning)
Load crYOLO model which was trained with 1.7.0b2
Read Anchor from model [3.2220039292730847, 3.2220039292730847]
Initialization of model with /apps/pyenv/versions/anaconda3-5.3.1/envs/cryolo-1.8.0-c11/lib/python3.8/site-packages/cryolo/full_yolo_backend.h5
Load weights: /mnt/gmodel_phosnet_202005_N63_c17.h5
Filtering /root/cryolo/test7.mrc ( Progress: 50 % )
Filtering /root/cryolo/test8.mrc ( Progress: 100 % )
Time needed for filtering: 0.27701520919799805
Reset progress bar: ( Progress: -1 % )
2021-12-27 21:09:52.137615: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
2021-12-27 21:09:53.902892: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
497 particles are found in image batch 1 / 1 ( Progress: 100 % )
#####################################
497 particles in total has been found ( 6 seconds)
Deleted 52 particles as they were not fully immersed in the micrograph
Deleted 0 particles as they were out of specified size range
#####################################
#####################################
## Particle diameter distribution ##
MEAN: 224 px
SD: 16 px
25%-Quantile: 211 px
50%-Quantile: 222 px
75%-Quantile: 237 px
Wrote particle size distribution summary to ./DISTR/size_distribution_summary_20211227-211000.txt
Wrote plot of particle size distribution to ./DISTR/size_distribution_20211227-211000.png
## Particle confidence distribution ##
Wrote confidence distribution summary ./DISTR/confidence_distribution_summary_20211227-211000.txt
Wrote confidence distribution to ./DISTR/confidence_distribution_20211227-211000.png
#####################################
(cryolo-1.8.0-c11) root@ubuntu:~/cryolo#
![[PukiWiki]](image/picc.png "[PukiWiki]")
