cryoSPARC/SingleWorkstation

[root@cryosparc ~]# cat /etc/redhat-release
Rocky Linux release 9.5 (Blue Onyx)
 
[root@cryosparc ~]# useradd -m -s /bin/bash cryosparc
 
[root@cryosparc ~]# id cryosparc
uid=1000(cryosparc) gid=1000(cryosparc) groups=1000(cryosparc)
 
(SELinux無効化)
[root@cryosparc ~]# grubby --update-kernel ALL --args selinux=0
[root@cryosparc ~]# grub2-mkconfig -o /boot/efi/EFI/rocky/grub.cfg   <--- UEFIなら
[root@cryosparc ~]# grub2-mkconfig -o /boot/grub2/grub.cfg           <--  BIOSなら
[root@cryosparc ~]# reboot
 :
[root@cryosparc ~]# getenforce
Disabled
[root@cryosparc ~]#

[root@cryosparc ~]# lsblk /dev/sdb
NAME MAJ:MIN RM SIZE RO TYPE MOUNTPOINTS
sdb    8:16   0   1T  0 disk
 
[root@cryosparc ~]# parted /dev/sdb mklabel gpt
[root@cryosparc ~]# parted /dev/sdb mkpart primary 0% 100%
[root@cryosparc ~]# mkfs.xfs -L scr /dev/sdb1
[root@cryosparc ~]# echo "LABEL=scr /scr xfs defaults 0 0" > /etc/fstab
[root@cryosparc ~]# mkdir /scr
[root@cryosparc ~]# systemctl daemon-reload
[root@cryosparc ~]# mount -a
 
[root@cryosparc ~]# chmod 1777 /scr

[root@cryosparc ~]# mkdir /scr/cs
[root@cryosparc ~]# chown cryosparc:cryosparc /scr/cs

[root@cryosparc ~]# su - cryosparc
[cryosparc@cryosparc ~]$ ssh-keygen -t ed25519
 :
Enter file in which to save the key (/home/cryosparc/.ssh/id_ed25519):   <--そのままリターン
Created directory '/home/cryosparc/.ssh'.
Enter passphrase (empty for no passphrase):   <--そのままリターン
Enter same passphrase again:   <--そのままリターン
 :
[cryosparc@cryosparc ~]$ 
[cryosparc@cryosparc ~]$ cat .ssh/id_ed25519.pub >> ~/.ssh/authorized_keys
[cryosparc@cryosparc ~]$ chmod 600  ~/.ssh/authorized_keys

[cryosparc@cryosparc ~]$ tar xf ~/src/cryosparc_master.tar.gz
[cryosparc@cryosparc ~]$ tar xf ~/src/cryosparc_worker.tar.gz
 
[cryosparc@cryosparc ~]$ cd cryosparc_master/
 
[cryosparc@cryosparc cryosparc_master]$ ./install.sh  \
--standalone \
--license xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx \
--worker_path /home/cryosparc/cryosparc_worker \
--dbpath /home/cryosparc/database \
--ssdpath /scr/cs \
--port 39000 \
--initial_email     saber@fgo.jp \
--initial_password  saber \
--initial_username  saber \
--initial_firstname Artoria \
--initial_lastname  Pendragon 
 

************ CRYOSPARC SYSTEM: STANDALONE INSTALLER **************
 
 Installation Settings:
   License ID              : xxxxxxxx-xxxx-xxxx-xxxx-xxxxxxxxxxxx
   Root Directory          : /home/cryosparc/cryosparc_master
   Master Hostname         : cryosparc.sybyl.local
   Database Directory      : /home/cryosparc/database
   Base HTTP Port Number   : 39000
   Developer Install       : false
   Operating System        : Linux
   Insecure Install        : false
   Standalone Install      : true
   Worker Root Directory   : /home/cryosparc/cryosparc_worker
   Initial User Email      : saber@fgo.jp
   Initial User Name       : saber
   Initial First Name      : Artoria
   Initial Last Name       : Pendragon
   SSD                     : true
   SSD Path                : /scr/cs
   Version                 : v4.7.1
 
******************************************************************
 
The CryoSPARC System master installation will host a database,
web application, and command layer for CryoSPARC, but will not
perform processing jobs.
 
Please read and confirm the above settings. The CryoSPARC database
will be stored at the database directory which is relative to the
root directory, unless provided as an absolute path.
You can change the database directory now by passing the --dbpath
parameter to this installer, or later via the command line.
 
Are the above settings correct?
1) Yes
2) No
#?

 CryoSPARC System master has now been installed.
 Add bin directory to your ~/.bashrc ?
1) Yes
2) No
#?

[cryosparc@cryosparc ~]$ cryosparcm stop
 
(確認)
[cryosparc@cryosparc ~]$ cryosparcm status
 :
CryoSPARC is not running.
 :
[cryosparc@cryosparc ~]$

[cryosparc@cryosparc ~]$ cryosparcm start
 :
CryoSPARC master started.
 From this machine, access CryoSPARC and CryoSPARC Live at
    http://localhost:39000
 
 From other machines on the network, access CryoSPARC and CryoSPARC Live at
    http://cryosparc.sybyl.local:39000
 
 
Startup can take several minutes. Point your browser to the address
and refresh until you see the CryoSPARC web interface.
[cryosparc@cryosparc ~]$

[cryosparc@cryosparc ~]$ ls -l cryosparc_master/systemd/
total 12
-rw-r--r--. 1 cryosparc cryosparc  376 Jun 19 23:12 cryosparc-supervisor.service
-rw-r--r--. 1 cryosparc cryosparc 1102 Jun 19 23:12 INSTALL-INSTRUCTIONS.txt
-rwxr-xr-x. 1 cryosparc cryosparc  432 Jun 19 23:12 install_services.sh
[cryosparc@cryosparc ~]$

[cryosparc@cryosparc ~]$ cd cryosparc_master/systemd/
 
[cryosparc@cryosparc systemd]$ eval $(cryosparcm env)
 
[cryosparc@cryosparc systemd]$ sudo env "CRYOSPARC_ROOT_DIR=$CRYOSPARC_ROOT_DIR" ./install_services.sh

[cryosparc@cryosparc systemd]$  su -
 
[root@cryosparc ~]# vi /etc/systemd/system/cryosparc-supervisor.service
[Unit]
Description=Process Monitoring and Control Daemon for CryoSPARC
 
[Service]
User=cryosparc
Group=cryosparc
Type=forking
ExecStart=/home/cryosparc/cryosparc_master/bin/cryosparcm supervisord -c /home/cryosparc/cryosparc_master/supervisord.conf
ExecStartPost=/home/cryosparc/cryosparc_master/bin/cryosparcm start --systemd
PIDFile=/home/cryosparc/cryosparc_master/run/supervisord.pid
WorkingDirectory=/home/cryosparc/cryosparc_master
 
[Install]
WantedBy=multi-user.target
 
[root@cryosparc ~]# systemctl daemon-reload
 
[root@cryosparc ~]#

[cryosparc@cryosparc ~]$ cryosparcm stop
 
[cryosparc@cryosparc ~]$ su -
 
[root@cryosparc ~]# systemctl enable cryosparc-supervisor.service --now

[cryosparc@cryosparc ~]$ cryosparcm stop
[cryosparc@cryosparc ~]$ rm /tmp/*.sock

[root@cryosparc ~]# systemctl restart cryosparc-supervisor.service