cryoSPARCさまから「2.11がリリースされたよ」との連絡を頂いた。
っで、updateしてみた

[cryosparc@c ~]$ cryosparcm update --check
CryoSPARC current version v2.9.0
          update starting on 2019年  9月 15日 日曜日 04:45:25 JST
 
  current version v2.9.0
      new version v2.11.0
 
Update available!
[cryosparc@c ~]$

っで、更新してみる

[cryosparc@c ~]$ cryosparcm update
CryoSPARC current version v2.9.0
          update starting on 2019年  9月 15日 日曜日 04:50:35 JST
 
No version specified - updating to latest version.
 
=============================
Updating to version v2.11.0.
=============================
CryoSPARC is not already running.
If you would like to restart, use cryosparcm restart
  Downloading master update...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  672M  100  672M    0     0  3744k      0  0:03:03  0:03:03 --:--:-- 16.2M
  Downloading worker update...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  732M  100  732M    0     0  4061k      0  0:03:04  0:03:04 --:--:-- 10.3M
  Done.
 
 Update will now be applied to the master installation,
 followed by worker installations on other node.
 
  Deleting old files...
  Extracting...
  Done.
  Updating dependencies...
  Checking dependencies...
  Dependencies for python have not changed.
  Currently checking hash for mongodb
  Dependencies for mongodb have not changed.
  Completed dependency check.
 
===================================================
Successfully updated master from version v2.9.0 to version v2.11.0.
===================================================
 
Starting cryoSPARC System master process..
CryoSPARC is not already running.
database: ERROR (spawn error)
command_core: started
  cryosparc command core startup complete.
command_vis: started
command_proxy: ERROR (spawn error)
webapp: started
-----------------------------------------------------
 
CryoSPARC master started.
 From this machine, access cryoSPARC at
    http://localhost:39000
 
 From other machines on the network, access cryoSPARC at
    http://c.sybyl.local:39000
 
 
Startup can take several minutes. Point your browser to the address
and refresh until you see the cryoSPARC web interface.
CryoSPARC is running.
Stopping cryosparc.
command_proxy: stopped
command_core: stopped
command_vis: stopped
webapp: stopped
Shut down
Starting cryoSPARC System master process..
CryoSPARC is not already running.
database: ERROR (spawn error)
command_core: ERROR (spawn error)
  cryosparc command core startup complete.
command_vis: started
command_proxy: ERROR (spawn error)
webapp: started
-----------------------------------------------------
 
CryoSPARC master started.
 From this machine, access cryoSPARC at
    http://localhost:39000
 
 From other machines on the network, access cryoSPARC at
    http://c.sybyl.local:39000
 
 
Startup can take several minutes. Point your browser to the address
and refresh until you see the cryoSPARC web interface.
 
 ===================================================
 Now updating worker nodes.
 
All workers:
 ---------------------------------------------------
 Done updating all worker nodes.
 If any nodes failed to update, you can manually update them.
 Cluster worker installations must be manually updated.
 
 To update manually, simply copy the cryosparc2_worker.tar.gz
 file into the cryosparc worker installation directory, and then run
    $ bin/cryosparcw update
 from inside the worker installation directory.
 
[cryosparc@c ~]$

前回同様、このん段階で「database: ERROR (spawn error)」、「command_core: ERROR (spawn error)」とか言われる。
ここではそのままに次の作業を行った

[cryosparc@c ~]$ cp -arp ./software/cryosparc/cryosparc2_master/cryosparc2_worker.tar.gz  \
    ./software/cryosparc/cryosparc2_worker/
 
[cryosparc@c ~]$ cd ./software/cryosparc/cryosparc2_worker/
 
[cryosparc@c cryosparc2_worker]$ bin/cryosparcw update
Updating... checking versions
Current version v2.9.0 - New version v2.11.0
=============================
Updating worker...
=============================
  Deleting old files...
  Extracting...
  Done.
  Updating dependencies...
Checking dependencies...
Dependencies for python have not changed.
Currently checking hash for ctffind
Dependencies for ctffind have not changed.
Currently checking hash for gctf
Dependencies for gctf have not changed.
Completed dependency check.
 
Successfully updated.
 
[cryosparc@c cryosparc2_worker]$

ここで一旦「cryosparcm stop」で関連アプリを停止させるが、psコマンドで稼働しているアプリがあるならkillして鎮める。
その後に「cryosparcm start」で稼働させる。
正常になったのかは「cryosparc status」で確認とブラウザでも確認する


トップ   編集 添付 複製 名前変更     ヘルプ   最終更新のRSS
Last-modified: 2019-09-15 (日) 05:11:24 (37d)