![[PukiWiki]](image/picc.png "[PukiWiki]")
本家様 https://github.com/ando-lab/miffi
pipyhttps://pypi.org/project/miffi/
Cryo-EM micrograph filtering utilizing Fourier space information
各自のホームディレクトリに各種pythonアプリの実行環境を用意するのではなく、rootで一元管理させるために「pyenv-conda」を使ってます.
pyenvでOS提供のpython環境から離れ、そのpyenv上にconda環境を独自に敷いてます
ここでは「/apps/pyenv」を起点としています
git clone https://github.com/yyuu/pyenv.git /apps/pyenv
export PYENV_ROOT=/apps/pyenv
export PATH=$PYENV_ROOT/bin:$PATH
pyenv install miniforge3-26.1.0-0
source /apps/pyenv/versions/miniforge3-26.1.0-0/etc/profile.d/conda.sh
conda update -n base -c conda-forge conda既にpyenv/conda 環境があるなら
source /apps/pyenv/versions/<conda>/etc/profile.d/conda.shとして「pyenv-conda」環境を整備します
っで、
conda create -n miffi python=3.9
conda activate miffi
cd /apps/src
git clone https://github.com/ando-lab/miffi.git
cd miffi
pip install .
mkdir /apps/miffi
miffi download -d /apps/miffi
conda deactivateEnvironment-modules
「/apps/modulefiles/miffi」
#%Module
set root /apps/pyenv/versions/miniforge3-26.1.0-0/envs/miffi
prepend-path PATH $root/bin
prepend-path LD_LIBRARY_PATH $root/lib一応conda list
# packages in environment at /apps/pyenv/versions/miniforge3-26.1.0-0/envs/miffi:
#
# Name Version Build Channel
_openmp_mutex 4.5 20_gnu conda-forge
annotated-doc 0.0.4 pypi_0 pypi
anyio 4.12.1 pypi_0 pypi
argon2-cffi 25.1.0 pypi_0 pypi
argon2-cffi-bindings 25.1.0 pypi_0 pypi
arrow 1.4.0 pypi_0 pypi
asttokens 3.0.1 pypi_0 pypi
async-lru 2.0.5 pypi_0 pypi
attrs 25.4.0 pypi_0 pypi
babel 2.18.0 pypi_0 pypi
beautifulsoup4 4.14.3 pypi_0 pypi
bleach 6.2.0 pypi_0 pypi
bzip2 1.0.8 hda65f42_9 conda-forge
ca-certificates 2026.2.25 hbd8a1cb_0 conda-forge
certifi 2026.2.25 pypi_0 pypi
cffi 2.0.0 pypi_0 pypi
charset-normalizer 3.4.6 pypi_0 pypi
click 8.1.8 pypi_0 pypi
comm 0.2.3 pypi_0 pypi
contourpy 1.3.0 pypi_0 pypi
cycler 0.12.1 pypi_0 pypi
debugpy 1.8.20 pypi_0 pypi
decorator 5.2.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
exceptiongroup 1.3.1 pypi_0 pypi
executing 2.2.1 pypi_0 pypi
fastjsonschema 2.21.2 pypi_0 pypi
filelock 3.19.1 pypi_0 pypi
fonttools 4.60.2 pypi_0 pypi
fqdn 1.5.1 pypi_0 pypi
fsspec 2025.10.0 pypi_0 pypi
h11 0.16.0 pypi_0 pypi
hf-xet 1.4.2 pypi_0 pypi
httpcore 1.0.9 pypi_0 pypi
httpx 0.28.1 pypi_0 pypi
huggingface-hub 1.7.1 pypi_0 pypi
icu 78.3 h33c6efd_0 conda-forge
idna 3.11 pypi_0 pypi
importlib-metadata 8.7.1 pypi_0 pypi
importlib-resources 6.5.2 pypi_0 pypi
ipykernel 6.31.0 pypi_0 pypi
ipython 8.18.1 pypi_0 pypi
ipywidgets 8.1.8 pypi_0 pypi
isoduration 20.11.0 pypi_0 pypi
jedi 0.19.2 pypi_0 pypi
jinja2 3.1.6 pypi_0 pypi
json5 0.13.0 pypi_0 pypi
jsonpointer 3.0.0 pypi_0 pypi
jsonschema 4.25.1 pypi_0 pypi
jsonschema-specifications 2025.9.1 pypi_0 pypi
jupyter-client 8.6.3 pypi_0 pypi
jupyter-core 5.8.1 pypi_0 pypi
jupyter-events 0.12.0 pypi_0 pypi
jupyter-lsp 2.3.0 pypi_0 pypi
jupyter-server 2.17.0 pypi_0 pypi
jupyter-server-terminals 0.5.4 pypi_0 pypi
jupyterlab 4.5.6 pypi_0 pypi
jupyterlab-pygments 0.3.0 pypi_0 pypi
jupyterlab-server 2.28.0 pypi_0 pypi
jupyterlab-widgets 3.0.16 pypi_0 pypi
kiwisolver 1.4.7 pypi_0 pypi
lark 1.3.1 pypi_0 pypi
ld_impl_linux-64 2.45.1 default_hbd61a6d_101 conda-forge
libexpat 2.7.4 hecca717_0 conda-forge
libffi 3.5.2 h3435931_0 conda-forge
libgcc 15.2.0 he0feb66_18 conda-forge
libgcc-ng 15.2.0 h69a702a_18 conda-forge
libgomp 15.2.0 he0feb66_18 conda-forge
liblzma 5.8.2 hb03c661_0 conda-forge
libnsl 2.0.1 hb9d3cd8_1 conda-forge
libsqlite 3.52.0 hf4e2dac_0 conda-forge
libstdcxx 15.2.0 h934c35e_18 conda-forge
libuuid 2.41.3 h5347b49_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libzlib 1.3.1 hb9d3cd8_2 conda-forge
markdown-it-py 3.0.0 pypi_0 pypi
markupsafe 3.0.3 pypi_0 pypi
matplotlib 3.9.4 pypi_0 pypi
matplotlib-inline 0.2.1 pypi_0 pypi
mdurl 0.1.2 pypi_0 pypi
miffi 1.0.2.dev5+g697c72545 pypi_0 pypi
mistune 3.2.0 pypi_0 pypi
mpmath 1.3.0 pypi_0 pypi
mrcfile 1.5.4 pypi_0 pypi
nbclient 0.10.2 pypi_0 pypi
nbconvert 7.17.0 pypi_0 pypi
nbformat 5.10.4 pypi_0 pypi
ncurses 6.5 h2d0b736_3 conda-forge
nest-asyncio 1.6.0 pypi_0 pypi
networkx 3.2.1 pypi_0 pypi
notebook-shim 0.2.4 pypi_0 pypi
numpy 2.0.2 pypi_0 pypi
nvidia-cublas-cu12 12.8.4.1 pypi_0 pypi
nvidia-cuda-cupti-cu12 12.8.90 pypi_0 pypi
nvidia-cuda-nvrtc-cu12 12.8.93 pypi_0 pypi
nvidia-cuda-runtime-cu12 12.8.90 pypi_0 pypi
nvidia-cudnn-cu12 9.10.2.21 pypi_0 pypi
nvidia-cufft-cu12 11.3.3.83 pypi_0 pypi
nvidia-cufile-cu12 1.13.1.3 pypi_0 pypi
nvidia-curand-cu12 10.3.9.90 pypi_0 pypi
nvidia-cusolver-cu12 11.7.3.90 pypi_0 pypi
nvidia-cusparse-cu12 12.5.8.93 pypi_0 pypi
nvidia-cusparselt-cu12 0.7.1 pypi_0 pypi
nvidia-nccl-cu12 2.27.3 pypi_0 pypi
nvidia-nvjitlink-cu12 12.8.93 pypi_0 pypi
nvidia-nvtx-cu12 12.8.90 pypi_0 pypi
openssl 3.6.1 h35e630c_1 conda-forge
overrides 7.7.0 pypi_0 pypi
packaging 26.0 pypi_0 pypi
pandas 2.3.3 pypi_0 pypi
pandocfilters 1.5.1 pypi_0 pypi
parso 0.8.6 pypi_0 pypi
pexpect 4.9.0 pypi_0 pypi
pillow 11.3.0 pypi_0 pypi
pip 25.2 pyh8b19718_0 conda-forge
platformdirs 4.4.0 pypi_0 pypi
prometheus-client 0.24.1 pypi_0 pypi
prompt-toolkit 3.0.52 pypi_0 pypi
psutil 7.2.2 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.3 pypi_0 pypi
pyarrow 21.0.0 pypi_0 pypi
pycparser 2.23 pypi_0 pypi
pygments 2.19.2 pypi_0 pypi
pyparsing 3.3.2 pypi_0 pypi
python 3.9.23 hc30ae73_0_cpython conda-forge
python-dateutil 2.9.0.post0 pypi_0 pypi
python-json-logger 4.0.0 pypi_0 pypi
pytz 2026.1.post1 pypi_0 pypi
pyyaml 6.0.3 pypi_0 pypi
pyzmq 27.1.0 pypi_0 pypi
readline 8.3 h853b02a_0 conda-forge
referencing 0.36.2 pypi_0 pypi
requests 2.32.5 pypi_0 pypi
rfc3339-validator 0.1.4 pypi_0 pypi
rfc3986-validator 0.1.1 pypi_0 pypi
rfc3987-syntax 1.1.0 pypi_0 pypi
rich 14.3.3 pypi_0 pypi
rpds-py 0.27.1 pypi_0 pypi
safetensors 0.7.0 pypi_0 pypi
send2trash 2.1.0 pypi_0 pypi
setuptools 80.9.0 pyhff2d567_0 conda-forge
shellingham 1.5.4 pypi_0 pypi
six 1.17.0 pypi_0 pypi
soupsieve 2.8.3 pypi_0 pypi
stack-data 0.6.3 pypi_0 pypi
starfile 0.5.13 pypi_0 pypi
sympy 1.14.0 pypi_0 pypi
terminado 0.18.1 pypi_0 pypi
timm 1.0.25 pypi_0 pypi
tinycss2 1.4.0 pypi_0 pypi
tk 8.6.13 noxft_h366c992_103 conda-forge
tomli 2.4.0 pypi_0 pypi
torch 2.8.0 pypi_0 pypi
torchvision 0.23.0 pypi_0 pypi
tornado 6.5.5 pypi_0 pypi
tqdm 4.67.3 pypi_0 pypi
traitlets 5.14.3 pypi_0 pypi
triton 3.4.0 pypi_0 pypi
typer 0.23.2 pypi_0 pypi
typing-extensions 4.15.0 pypi_0 pypi
tzdata 2025.3 pypi_0 pypi
uri-template 1.3.0 pypi_0 pypi
urllib3 2.6.3 pypi_0 pypi
wcwidth 0.6.0 pypi_0 pypi
webcolors 24.11.1 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.9.0 pypi_0 pypi
wheel 0.45.1 pyhd8ed1ab_1 conda-forge
widgetsnbextension 4.0.15 pypi_0 pypi
zipp 3.23.0 pypi_0 pypi
zstd 1.5.7 hb78ec9c_6 conda-forge
