JupyterLab をテンプレートにして作成
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開始行:
&color(red){しゅうせいちゅう};
[[Jupyter Notebook>JupyterNotebook]]の進化版 JupyterLab ...
pyenv/anacondaの仮想実行環境を作ってそこにインストールし...
OSの環境は下記になります
#code(nonumber){{
[root@rockylinux9 ~]# cat /etc/redhat-release
Rocky Linux release 9.2 (Blue Onyx)
[root@rockylinux9 ~]# cat /proc/driver/nvidia/version
NVRM version: NVIDIA UNIX x86_64 Kernel Module 535.43.02...
GCC version: gcc version 11.3.1 20221121 (Red Hat 11.3.1...
[root@rockylinux9 ~]#
}}
各自のホームディレクトリに各種pythonアプリの(仮想)実行環...
rootでアプリの一元管理させたいので「pyenv-anaconda」を使...
pyenvでOS提供のpython,anaconda環境から離れ、そのpyenv上に...
#code(nonumber){{
git clone https://github.com/yyuu/pyenv.git /apps/pyenv
export PYENV_ROOT=/apps/pyenv
export PATH=$PYENV_ROOT/bin:$PATH
pyenv install anaconda3-2023.03
pyenv global anaconda3-2023.03
export PATH=$PYENV_ROOT/versions/anaconda3-2023.03/bin/:$...
conda update conda -y
(既に環境があるなら)
export PYENV_ROOT=/apps/pyenv
export PATH=$PYENV_ROOT/bin:$PATH
export PATH=$PYENV_ROOT/versions/anaconda3-2023.03/bin/:$...
}}
まず、jupyterlabの実行環境を作ります. &size(10){pyenv/ana...
#code(nonumber){{
[root@rockylinux9 ~]# conda create -n jupyterlab
[root@rockylinux9 ~]# source activate jupyterlab
(jupyterlab) [root@rockylinux9 ~]# conda install -c conda...
(jupyterlab) [root@rockylinux9 ~]# pip install environmen...
(jupyterlab) [root@rockylinux9 ~]# jupyter --version
Selected Jupyter core packages...
IPython : 8.14.0
ipykernel : 6.23.1
ipywidgets : not installed
jupyter_client : 8.2.0
jupyter_core : 5.3.0
jupyter_server : 2.6.0
jupyterlab : 4.0.1
nbclient : 0.8.0
nbconvert : 7.4.0
nbformat : 5.9.0
notebook : not installed
qtconsole : not installed
traitlets : 5.9.0
(jupyterlab) [root@rockylinux9 ~]#
(jupyterlab) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
}}
jupyterlabはpythonコードを実行する場で「kernel」という名...
なので簡単にですが、python3.10実行環境、python3.11実行環...
#code(nonumber){{
[root@rockylinux9 ~]# conda create -n py06 python=3.06 -y
[root@rockylinux9 ~]# conda create -n py10 python=3.10 -y
[root@rockylinux9 ~]# conda create -n py11 python=3.11 -y
[root@rockylinux9 ~]# conda create -n eman2.99.47 eman-de...
[root@rockylinux9 ~]# conda create -n topaz python=3.6 to...
[root@rockylinux9 ~]# conda env list
# conda environments:
#
base /apps/pyenv/versions/anaconda3-2...
eman2.99.47 /apps/pyenv/versions/anaconda3-2...
jupyterlab /apps/pyenv/versions/anaconda3-2...
py06 /apps/pyenv/versions/anaconda3-2...
py10 /apps/pyenv/versions/anaconda3-2...
py11 /apps/pyenv/versions/anaconda3-2...
topaz /apps/pyenv/versions/anaconda3-2...
[root@rockylinux9 ~]#
}}
以上「jupyterlab」以外にも「py10」と「py11」の他、「eman2...
これらを「jupyterlab」から使ってみる
&size(10){たぶんcryoSPARCも使えるのかなと};
っでこれら実行環境をjupyterlabから利用するには「ipykernel...
&size(10){baseでjupyterlabを動かすなら不要な気がしますが...
#code(nonumber){{
[root@rockylinux9 ~]# conda activate py06
(py06) [root@rockylinux9 ~]# conda install ipykernel -y
(py06) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]# conda activate py10
(py10) [root@rockylinux9 ~]# conda install ipykernel -y
(py10) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
[root@rockylinux9 ~]# conda activate py11
(py11) [root@rockylinux9 ~]# conda install ipykernel -y
(py11) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
[root@rockylinux9 ~]# conda activate eman2.99.47
(eman2.99.47) [root@rockylinux9 ~]# conda install ipykern...
(eman2.99.47) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
[root@rockylinux9 ~]# conda activate topaz
(topaz) [root@rockylinux9 ~]# conda install ipykernel -y
(topaz) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
}}
***Environment Modules [#s390c2b2]
「/apps/modulefiles/JupyterLab/4.0.1」
#code(nonumber){{
[root@rockylinux9 ~]# mkdir -p /apps/modulefiles/JupyterLab
[root@rockylinux9 ~]# vi /apps/modulefiles/JupyterLab/4.0.1
#%Module1.0
set root /apps/pyenv/versions/anaconda3-2023.03/...
prepend-path PATH $root/bin
[root@rockylinux9 ~]#
}}
***つかう [#pec44184]
jupyterlabを起動させて、その中で「py06」環境をロードして...
面倒ですが、今度はユーザ側でjupyterlabでロードする環境を...
#code(nonumber){{
[saber@rockylinux9 ~]$ module use /apps/modulefiles/
[saber@rockylinux9 ~]$ module load JupyterLab
[saber@rockylinux9 ~]$ jupyter --version
Selected Jupyter core packages...
IPython : 8.14.0
ipykernel : 6.23.1
ipywidgets : not installed
jupyter_client : 8.2.0
jupyter_core : 5.3.0
jupyter_server : 2.6.0
jupyterlab : 4.0.1
nbclient : 0.8.0
nbconvert : 7.4.0
nbformat : 5.9.0
notebook : not installed
qtconsole : not installed
traitlets : 5.9.0
[saber@rockylinux9 ~]$
[saber@rockylinux9 ~]$ jupyter lab --generate-config
Writing default config to: /home/saber/.jupyter/jupyter_l...
[saber@rockylinux9 ~]$
}}
ここで得られた「jupyter_lab_config.py」を修正します. 修正...
#code(nonumber){{
[saber@rockylinux9 ~]$ vi /home/saber/.jupyter/jupyter_la...
:
c.ServerApp.ip = '*'
:
#c.NotebookApp.kernel_spec_manager_class='environment_ker...
#c.EnvironmentKernelSpecManager.conda_env_dirs=['/apps/py...
[saber@rockylinux9 ~]$
}}
ここでは「ipykernel」を入れた２つ「py06」と「py10」を定義...
#code(nonumber){{
[saber@rockylinux9 ~]$ conda activate py06
(py06) [saber@rockylinux9 ~]$ python -m ipykernel install...
Installed kernelspec py06 in /home/saber/.local/share/jup...
(py06) [saber@rockylinux9 ~]$ conda deactivate
[saber@rockylinux9 ~]$
[saber@rockylinux9 ~]$ conda activate py10
(py10) [saber@rockylinux9 ~]$ python -m ipykernel install...
Installed kernelspec py10 in /home/saber/.local/share/jup...
(py10) [saber@rockylinux9 ~]$
(py10) [saber@rockylinux9 ~]$ conda deactivate
[saber@rockylinux9 ~]$
}}
jupyterlabを起動させます.
#code(nonumber){{
[saber@rockylinux9 ~]$ conda activate jupyterlab
(jupyterlab) [saber@rockylinux9 ~]$ jupyter lab
[I 2023-06-05 03:27:23.051 ServerApp] Package jupyterlab ...
:
[I 2023-06-05 03:27:23.182 ServerApp] Use Control-C to st...
[C 2023-06-05 03:27:31.784 ServerApp]
To access the server, open this file in a browser:
file:///home/saber/.local/share/jupyter/runtime/j...
Or copy and paste one of these URLs:
http://localhost:8888/lab?token=a22be4b390054261f...
http://127.0.0.1:8888/lab?token=a22be4b390054261f...
[I 2023-06-05 03:27:31.793 ServerApp] Skipped non-install...
:
}}
となってサーバ側(rockylinux9)のブラウザが立ち上がりますが...
#code(nonumber){{
http://rockylinux9:8888/lab?token=a22be4b390054261fbc6dfd...
}}
としてアクセスします.
&ref(2023y06m05d_033240609.png,nolink,70%);
独自の実行環境「py10」が選べるようになります
***使ってみる [#g586ecab]
アプリをインストールしたので、次は各自のユーザアカウント...
まずはmoduleコマンドで環境をロードします
#code(nonumber){{
[illya@s ~]$ module load JupyterLab
}}
次に初回だけですが、セットアップファイルを取得します
#code(nonumber){{
[illya@s ~]$ jupyter lab --generate-config
Writing default config to: /home/illya/.jupyter/jupyter_l...
[illya@s ~]$
}}
この「/home/illya/.jupyter/jupyter_lab_config.py」を修正...
-実行ホスト以外からのアクセスを許可するか(リモートアクセ...
-パスワードでアクセス制御するか
-リモートアクセス時のport番号は
とかでしょうか。パスワードは生のままでは定義できないよう...
#code(nonumber){{
[illya@s ~]$ ipython
Python 3.8.5 (default, Sep 4 2020, 07:30:14)
Type 'copyright', 'credits' or 'license' for more informa...
IPython 7.27.0 -- An enhanced Interactive Python. Type '?...
In [1]: from IPython.lib import passwd
In [2]: passwd()
Enter password: <--パスワードを入力
Verify password:
Out[2]: 'sha1:055bde1f9548:057b18ee2742d8b17xxxxxxxxxxxxx...
In [3]: quit()
[illya@s ~]$
}}
っで「/home/illya/.jupyter/jupyter_lab_config.py」を修正...
#code(diff,nonumber){{
--- /home/illya/.jupyter/jupyter_lab_config.py.orig 2...
+++ /home/illya/.jupyter/jupyter_lab_config.py 2021-09-0...
@@ -755,7 +755,7 @@
## The IP address the Jupyter server will listen on.
# Default: 'localhost'
-# c.ServerApp.ip = 'localhost'
+c.ServerApp.ip = '0.0.0.0'
## Jinja environment に渡される追加の引数を指定します。
# Default: {}
@@ -854,7 +854,7 @@
# The string should be of the for...
# password.
# Default: ''
-# c.ServerApp.password = ''
+c.ServerApp.password = 'sha1:055bde1f9548:057b18ee2742d8...
## Forces users to use a password for the Jupyter server.
# This is useful in a multi user ...
@@ -867,7 +867,7 @@
## The port the server will listen on (env: JUPYTER_PORT).
# Default: 0
-# c.ServerApp.port = 0
+c.ServerApp.port = 8787
## The number of additional ports to try if the specifie...
# (env: JUPYTER_PORT_RETRIES).
}}
っでJupyter Labを起動します
#code(nonumber){{
[illya@s ~]$ jupyter lab
[I 2021-09-05 19:57:33.736 ServerApp] jupyterlab | extens...
[I 2021-09-05 19:57:33.756 ServerApp] Writing Jupyter ser...
[I 2021-09-05 19:57:33.894 ServerApp] nbclassic | extensi...
[I 2021-09-05 19:57:33.937 ServerApp] nbclassic | extensi...
[I 2021-09-05 19:57:33.938 LabApp] JupyterLab extension l...
[I 2021-09-05 19:57:33.938 LabApp] JupyterLab application...
[I 2021-09-05 19:57:33.941 ServerApp] jupyterlab | extens...
[I 2021-09-05 19:57:33.941 ServerApp] ローカルディレクト...
[I 2021-09-05 19:57:33.941 ServerApp] Jupyter Server 1.10...
[I 2021-09-05 19:57:33.941 ServerApp] http://s:8787/lab
[I 2021-09-05 19:57:33.941 ServerApp] or http://127.0.0....
[I 2021-09-05 19:57:33.941 ServerApp] サーバを停止し全て...
[W 2021-09-05 19:57:33.960 ServerApp] ウェブブラウザが見...
(フォアグランドで動きます)
}}
ここでブラウザを空けて「http://s:8787/lab」にアクセスします
&ref(2021y09m05d_195824490.png,nolink);
と表記され、先ほどハッシュ化文字列を作る際に使用した文字...
すると今夏画面になります
&ref(2021y09m05d_200107975.png,nolink);
***メモ [#dec1100b]
https://github.com/jupyter/nbconvert/issues/1594 から
#code(nonumber){{
chmod -R 777 /usr/share/jupyter/nbconvert/templates/
chmod -R 777 /usr/local/share/jupyter/nbconvert/templates/
}}
とあるが、、微妙
「jupyter lab」で起動させるとフォアグランドで稼働します。...
そのまま稼働し続けさせるには「nohup」を使って「nohup jupy...
「nohup」で動かしたプロセスを停止するには「ps -ef |grep j...
***JupyterLabからRを使うには [#hed72d5f]
起動しているJupyterLab があるなら停止します。その後に下記...
まず、インストールは２系統あるようで１つはGitHubから最新...
(GitHubを活用)「install.packages('devtools')」「devtools:...
(cranを活用)「install.packages('IRkernel')」「IRkernel::i...
ここではcranを使って入れています
#code(nonumber){{
[illya@s ~]$ module load R
[illya@s ~]$ module load JupyterLab
[illya@s ~]$ R
> install.packages('IRkernel')
install.packages("IRkernel") で警告がありました:
'lib = "/share/apps/R-4.1.1/lib64/R/library"' is not wr...
Would you like to use a personal library instead? (yes/No...
Would you like to create a personal library
‘/home/illya/R/4.1.1’
to install packages into? (yes/No/cancel) yes
:
:
> IRkernel::installspec(name = 'ir411', displayname = 'R ...
[InstallKernelSpec] Installed kernelspec ir411 in /home/i...
> quit()
Save workspace image? [y/n/c]: n
[illya@s ~]$
}}
この後に JupyterLab を起動するとJupyterLab から「R」が使...
終了行:
&color(red){しゅうせいちゅう};
[[Jupyter Notebook>JupyterNotebook]]の進化版 JupyterLab ...
pyenv/anacondaの仮想実行環境を作ってそこにインストールし...
OSの環境は下記になります
#code(nonumber){{
[root@rockylinux9 ~]# cat /etc/redhat-release
Rocky Linux release 9.2 (Blue Onyx)
[root@rockylinux9 ~]# cat /proc/driver/nvidia/version
NVRM version: NVIDIA UNIX x86_64 Kernel Module 535.43.02...
GCC version: gcc version 11.3.1 20221121 (Red Hat 11.3.1...
[root@rockylinux9 ~]#
}}
各自のホームディレクトリに各種pythonアプリの(仮想)実行環...
rootでアプリの一元管理させたいので「pyenv-anaconda」を使...
pyenvでOS提供のpython,anaconda環境から離れ、そのpyenv上に...
#code(nonumber){{
git clone https://github.com/yyuu/pyenv.git /apps/pyenv
export PYENV_ROOT=/apps/pyenv
export PATH=$PYENV_ROOT/bin:$PATH
pyenv install anaconda3-2023.03
pyenv global anaconda3-2023.03
export PATH=$PYENV_ROOT/versions/anaconda3-2023.03/bin/:$...
conda update conda -y
(既に環境があるなら)
export PYENV_ROOT=/apps/pyenv
export PATH=$PYENV_ROOT/bin:$PATH
export PATH=$PYENV_ROOT/versions/anaconda3-2023.03/bin/:$...
}}
まず、jupyterlabの実行環境を作ります. &size(10){pyenv/ana...
#code(nonumber){{
[root@rockylinux9 ~]# conda create -n jupyterlab
[root@rockylinux9 ~]# source activate jupyterlab
(jupyterlab) [root@rockylinux9 ~]# conda install -c conda...
(jupyterlab) [root@rockylinux9 ~]# pip install environmen...
(jupyterlab) [root@rockylinux9 ~]# jupyter --version
Selected Jupyter core packages...
IPython : 8.14.0
ipykernel : 6.23.1
ipywidgets : not installed
jupyter_client : 8.2.0
jupyter_core : 5.3.0
jupyter_server : 2.6.0
jupyterlab : 4.0.1
nbclient : 0.8.0
nbconvert : 7.4.0
nbformat : 5.9.0
notebook : not installed
qtconsole : not installed
traitlets : 5.9.0
(jupyterlab) [root@rockylinux9 ~]#
(jupyterlab) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
}}
jupyterlabはpythonコードを実行する場で「kernel」という名...
なので簡単にですが、python3.10実行環境、python3.11実行環...
#code(nonumber){{
[root@rockylinux9 ~]# conda create -n py06 python=3.06 -y
[root@rockylinux9 ~]# conda create -n py10 python=3.10 -y
[root@rockylinux9 ~]# conda create -n py11 python=3.11 -y
[root@rockylinux9 ~]# conda create -n eman2.99.47 eman-de...
[root@rockylinux9 ~]# conda create -n topaz python=3.6 to...
[root@rockylinux9 ~]# conda env list
# conda environments:
#
base /apps/pyenv/versions/anaconda3-2...
eman2.99.47 /apps/pyenv/versions/anaconda3-2...
jupyterlab /apps/pyenv/versions/anaconda3-2...
py06 /apps/pyenv/versions/anaconda3-2...
py10 /apps/pyenv/versions/anaconda3-2...
py11 /apps/pyenv/versions/anaconda3-2...
topaz /apps/pyenv/versions/anaconda3-2...
[root@rockylinux9 ~]#
}}
以上「jupyterlab」以外にも「py10」と「py11」の他、「eman2...
これらを「jupyterlab」から使ってみる
&size(10){たぶんcryoSPARCも使えるのかなと};
っでこれら実行環境をjupyterlabから利用するには「ipykernel...
&size(10){baseでjupyterlabを動かすなら不要な気がしますが...
#code(nonumber){{
[root@rockylinux9 ~]# conda activate py06
(py06) [root@rockylinux9 ~]# conda install ipykernel -y
(py06) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]# conda activate py10
(py10) [root@rockylinux9 ~]# conda install ipykernel -y
(py10) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
[root@rockylinux9 ~]# conda activate py11
(py11) [root@rockylinux9 ~]# conda install ipykernel -y
(py11) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
[root@rockylinux9 ~]# conda activate eman2.99.47
(eman2.99.47) [root@rockylinux9 ~]# conda install ipykern...
(eman2.99.47) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
[root@rockylinux9 ~]# conda activate topaz
(topaz) [root@rockylinux9 ~]# conda install ipykernel -y
(topaz) [root@rockylinux9 ~]# conda deactivate
[root@rockylinux9 ~]#
}}
***Environment Modules [#s390c2b2]
「/apps/modulefiles/JupyterLab/4.0.1」
#code(nonumber){{
[root@rockylinux9 ~]# mkdir -p /apps/modulefiles/JupyterLab
[root@rockylinux9 ~]# vi /apps/modulefiles/JupyterLab/4.0.1
#%Module1.0
set root /apps/pyenv/versions/anaconda3-2023.03/...
prepend-path PATH $root/bin
[root@rockylinux9 ~]#
}}
***つかう [#pec44184]
jupyterlabを起動させて、その中で「py06」環境をロードして...
面倒ですが、今度はユーザ側でjupyterlabでロードする環境を...
#code(nonumber){{
[saber@rockylinux9 ~]$ module use /apps/modulefiles/
[saber@rockylinux9 ~]$ module load JupyterLab
[saber@rockylinux9 ~]$ jupyter --version
Selected Jupyter core packages...
IPython : 8.14.0
ipykernel : 6.23.1
ipywidgets : not installed
jupyter_client : 8.2.0
jupyter_core : 5.3.0
jupyter_server : 2.6.0
jupyterlab : 4.0.1
nbclient : 0.8.0
nbconvert : 7.4.0
nbformat : 5.9.0
notebook : not installed
qtconsole : not installed
traitlets : 5.9.0
[saber@rockylinux9 ~]$
[saber@rockylinux9 ~]$ jupyter lab --generate-config
Writing default config to: /home/saber/.jupyter/jupyter_l...
[saber@rockylinux9 ~]$
}}
ここで得られた「jupyter_lab_config.py」を修正します. 修正...
#code(nonumber){{
[saber@rockylinux9 ~]$ vi /home/saber/.jupyter/jupyter_la...
:
c.ServerApp.ip = '*'
:
#c.NotebookApp.kernel_spec_manager_class='environment_ker...
#c.EnvironmentKernelSpecManager.conda_env_dirs=['/apps/py...
[saber@rockylinux9 ~]$
}}
ここでは「ipykernel」を入れた２つ「py06」と「py10」を定義...
#code(nonumber){{
[saber@rockylinux9 ~]$ conda activate py06
(py06) [saber@rockylinux9 ~]$ python -m ipykernel install...
Installed kernelspec py06 in /home/saber/.local/share/jup...
(py06) [saber@rockylinux9 ~]$ conda deactivate
[saber@rockylinux9 ~]$
[saber@rockylinux9 ~]$ conda activate py10
(py10) [saber@rockylinux9 ~]$ python -m ipykernel install...
Installed kernelspec py10 in /home/saber/.local/share/jup...
(py10) [saber@rockylinux9 ~]$
(py10) [saber@rockylinux9 ~]$ conda deactivate
[saber@rockylinux9 ~]$
}}
jupyterlabを起動させます.
#code(nonumber){{
[saber@rockylinux9 ~]$ conda activate jupyterlab
(jupyterlab) [saber@rockylinux9 ~]$ jupyter lab
[I 2023-06-05 03:27:23.051 ServerApp] Package jupyterlab ...
:
[I 2023-06-05 03:27:23.182 ServerApp] Use Control-C to st...
[C 2023-06-05 03:27:31.784 ServerApp]
To access the server, open this file in a browser:
file:///home/saber/.local/share/jupyter/runtime/j...
Or copy and paste one of these URLs:
http://localhost:8888/lab?token=a22be4b390054261f...
http://127.0.0.1:8888/lab?token=a22be4b390054261f...
[I 2023-06-05 03:27:31.793 ServerApp] Skipped non-install...
:
}}
となってサーバ側(rockylinux9)のブラウザが立ち上がりますが...
#code(nonumber){{
http://rockylinux9:8888/lab?token=a22be4b390054261fbc6dfd...
}}
としてアクセスします.
&ref(2023y06m05d_033240609.png,nolink,70%);
独自の実行環境「py10」が選べるようになります
***使ってみる [#g586ecab]
アプリをインストールしたので、次は各自のユーザアカウント...
まずはmoduleコマンドで環境をロードします
#code(nonumber){{
[illya@s ~]$ module load JupyterLab
}}
次に初回だけですが、セットアップファイルを取得します
#code(nonumber){{
[illya@s ~]$ jupyter lab --generate-config
Writing default config to: /home/illya/.jupyter/jupyter_l...
[illya@s ~]$
}}
この「/home/illya/.jupyter/jupyter_lab_config.py」を修正...
-実行ホスト以外からのアクセスを許可するか(リモートアクセ...
-パスワードでアクセス制御するか
-リモートアクセス時のport番号は
とかでしょうか。パスワードは生のままでは定義できないよう...
#code(nonumber){{
[illya@s ~]$ ipython
Python 3.8.5 (default, Sep 4 2020, 07:30:14)
Type 'copyright', 'credits' or 'license' for more informa...
IPython 7.27.0 -- An enhanced Interactive Python. Type '?...
In [1]: from IPython.lib import passwd
In [2]: passwd()
Enter password: <--パスワードを入力
Verify password:
Out[2]: 'sha1:055bde1f9548:057b18ee2742d8b17xxxxxxxxxxxxx...
In [3]: quit()
[illya@s ~]$
}}
っで「/home/illya/.jupyter/jupyter_lab_config.py」を修正...
#code(diff,nonumber){{
--- /home/illya/.jupyter/jupyter_lab_config.py.orig 2...
+++ /home/illya/.jupyter/jupyter_lab_config.py 2021-09-0...
@@ -755,7 +755,7 @@
## The IP address the Jupyter server will listen on.
# Default: 'localhost'
-# c.ServerApp.ip = 'localhost'
+c.ServerApp.ip = '0.0.0.0'
## Jinja environment に渡される追加の引数を指定します。
# Default: {}
@@ -854,7 +854,7 @@
# The string should be of the for...
# password.
# Default: ''
-# c.ServerApp.password = ''
+c.ServerApp.password = 'sha1:055bde1f9548:057b18ee2742d8...
## Forces users to use a password for the Jupyter server.
# This is useful in a multi user ...
@@ -867,7 +867,7 @@
## The port the server will listen on (env: JUPYTER_PORT).
# Default: 0
-# c.ServerApp.port = 0
+c.ServerApp.port = 8787
## The number of additional ports to try if the specifie...
# (env: JUPYTER_PORT_RETRIES).
}}
っでJupyter Labを起動します
#code(nonumber){{
[illya@s ~]$ jupyter lab
[I 2021-09-05 19:57:33.736 ServerApp] jupyterlab | extens...
[I 2021-09-05 19:57:33.756 ServerApp] Writing Jupyter ser...
[I 2021-09-05 19:57:33.894 ServerApp] nbclassic | extensi...
[I 2021-09-05 19:57:33.937 ServerApp] nbclassic | extensi...
[I 2021-09-05 19:57:33.938 LabApp] JupyterLab extension l...
[I 2021-09-05 19:57:33.938 LabApp] JupyterLab application...
[I 2021-09-05 19:57:33.941 ServerApp] jupyterlab | extens...
[I 2021-09-05 19:57:33.941 ServerApp] ローカルディレクト...
[I 2021-09-05 19:57:33.941 ServerApp] Jupyter Server 1.10...
[I 2021-09-05 19:57:33.941 ServerApp] http://s:8787/lab
[I 2021-09-05 19:57:33.941 ServerApp] or http://127.0.0....
[I 2021-09-05 19:57:33.941 ServerApp] サーバを停止し全て...
[W 2021-09-05 19:57:33.960 ServerApp] ウェブブラウザが見...
(フォアグランドで動きます)
}}
ここでブラウザを空けて「http://s:8787/lab」にアクセスします
&ref(2021y09m05d_195824490.png,nolink);
と表記され、先ほどハッシュ化文字列を作る際に使用した文字...
すると今夏画面になります
&ref(2021y09m05d_200107975.png,nolink);
***メモ [#dec1100b]
https://github.com/jupyter/nbconvert/issues/1594 から
#code(nonumber){{
chmod -R 777 /usr/share/jupyter/nbconvert/templates/
chmod -R 777 /usr/local/share/jupyter/nbconvert/templates/
}}
とあるが、、微妙
「jupyter lab」で起動させるとフォアグランドで稼働します。...
そのまま稼働し続けさせるには「nohup」を使って「nohup jupy...
「nohup」で動かしたプロセスを停止するには「ps -ef |grep j...
***JupyterLabからRを使うには [#hed72d5f]
起動しているJupyterLab があるなら停止します。その後に下記...
まず、インストールは２系統あるようで１つはGitHubから最新...
(GitHubを活用)「install.packages('devtools')」「devtools:...
(cranを活用)「install.packages('IRkernel')」「IRkernel::i...
ここではcranを使って入れています
#code(nonumber){{
[illya@s ~]$ module load R
[illya@s ~]$ module load JupyterLab
[illya@s ~]$ R
> install.packages('IRkernel')
install.packages("IRkernel") で警告がありました:
'lib = "/share/apps/R-4.1.1/lib64/R/library"' is not wr...
Would you like to use a personal library instead? (yes/No...
Would you like to create a personal library
‘/home/illya/R/4.1.1’
to install packages into? (yes/No/cancel) yes
:
:
> IRkernel::installspec(name = 'ir411', displayname = 'R ...
[InstallKernelSpec] Installed kernelspec ir411 in /home/i...
> quit()
Save workspace image? [y/n/c]: n
[illya@s ~]$
}}
この後に JupyterLab を起動するとJupyterLab から「R」が使...
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