TARDIS をテンプレートにして作成
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開始行:
本家様 [[https://github.com/SMLC-NYSBC/TARDIS>+https://gi...
pipy [[https://pypi.org/project/tardis-em/>+https://pypi....
pipyの内容から「Python !=3.12, >=3.10」とあったので、3.10...
あと pytorch も必要なようで cuda12.4 対応な 3.11 なら
https://download.pytorch.org/whl/cu128
「torch-2.6.0+cu124-cp311-cp311-linux_x86_64.whl」が最大...
cuda12.8 対応なら
「torch-2.11.0+cu128-cp311-cp311-manylinux_2_28_x86_64.wh...
(2026.7時点で pytorch の最新は 12.1)
ここでは GPU が Ampere系なので cuda12.4 対応品を適用して...
blackwellなら cuda12.8向けかな.
&size(10){どうやら torch>2.0.0 っぽい。「pip install tard...
#code(nonumber){{
conda create -n TARDIS python=3.11 pip
conda activate TARDIS
pip install "https://download-r2.pytorch.org/whl/cu124/to...
}}
#code(nonumber){{
# Name Version Build ...
_openmp_mutex 4.5 20_gnu ...
bzip2 1.0.8 hda65f42_9 ...
ca-certificates 2026.6.17 hbd8a1cb_0 ...
filelock 3.29.4 pypi_0 ...
fsspec 2026.6.0 pypi_0 ...
jinja2 3.1.6 pypi_0 ...
ld_impl_linux-64 2.45.1 default_hbd6...
libexpat 2.8.1 hecca717_1 ...
libffi 3.5.2 h3435931_0 ...
libgcc 15.2.0 he0feb66_19 ...
libgcc-ng 15.2.0 h69a702a_19 ...
libgomp 15.2.0 he0feb66_19 ...
liblzma 5.8.3 hb03c661_0 ...
libnsl 2.0.1 hb9d3cd8_1 ...
libsqlite 3.53.3 h0c1763c_0 ...
libuuid 2.42.2 h5347b49_0 ...
libxcrypt 4.4.36 hd590300_1 ...
libzlib 1.3.2 h25fd6f3_2 ...
markupsafe 3.0.3 pypi_0 ...
mpmath 1.3.0 pypi_0 ...
ncurses 6.6 hdb14827_0 ...
networkx 3.6.1 pypi_0 ...
nvidia-cublas-cu12 12.4.5.8 pypi_0 ...
nvidia-cuda-cupti-cu12 12.4.127 pypi_0 ...
nvidia-cuda-nvrtc-cu12 12.4.127 pypi_0 ...
nvidia-cuda-runtime-cu12 12.4.127 pypi_0 ...
nvidia-cudnn-cu12 9.1.0.70 pypi_0 ...
nvidia-cufft-cu12 11.2.1.3 pypi_0 ...
nvidia-curand-cu12 10.3.5.147 pypi_0 ...
nvidia-cusolver-cu12 11.6.1.9 pypi_0 ...
nvidia-cusparse-cu12 12.3.1.170 pypi_0 ...
nvidia-cusparselt-cu12 0.6.2 pypi_0 ...
nvidia-nccl-cu12 2.21.5 pypi_0 ...
nvidia-nvjitlink-cu12 12.4.127 pypi_0 ...
nvidia-nvtx-cu12 12.4.127 pypi_0 ...
openssl 3.6.3 h35e630c_0 ...
packaging 26.2 pyhc364b38_0...
pip 26.1.2 pyh8b19718_0...
python 3.11.15 h7508c33_1_c...
readline 8.3 h853b02a_0 ...
setuptools 82.0.1 pyh332efcf_0...
sympy 1.13.1 pypi_0 ...
tk 8.6.13 noxft_h366c9...
torch 2.6.0+cu124 pypi_0 ...
triton 3.2.0 pypi_0 ...
typing-extensions 4.16.0 pypi_0 ...
tzdata 2025c hc9c84f9_1 ...
wheel 0.47.0 pyhd8ed1ab_0...
zstd 1.5.7 hb78ec9c_6 ...
}}
#code(nonumber){{
pip install tardis-em
pip install napari-tardis-em
}}
***environment-modules [#s7a21bf6]
「/apps/modulefiles/TARDIS」
#code(nonumber){{
#%Module1.0
set root /apps/pyenv/versions/miniforge3-26.1.1-3/envs/TA...
prepend-path PATH $root/bin
prepend-path LD_LIBRARY_PATH $root/lib
}}
終了行:
本家様 [[https://github.com/SMLC-NYSBC/TARDIS>+https://gi...
pipy [[https://pypi.org/project/tardis-em/>+https://pypi....
pipyの内容から「Python !=3.12, >=3.10」とあったので、3.10...
あと pytorch も必要なようで cuda12.4 対応な 3.11 なら
https://download.pytorch.org/whl/cu128
「torch-2.6.0+cu124-cp311-cp311-linux_x86_64.whl」が最大...
cuda12.8 対応なら
「torch-2.11.0+cu128-cp311-cp311-manylinux_2_28_x86_64.wh...
(2026.7時点で pytorch の最新は 12.1)
ここでは GPU が Ampere系なので cuda12.4 対応品を適用して...
blackwellなら cuda12.8向けかな.
&size(10){どうやら torch>2.0.0 っぽい。「pip install tard...
#code(nonumber){{
conda create -n TARDIS python=3.11 pip
conda activate TARDIS
pip install "https://download-r2.pytorch.org/whl/cu124/to...
}}
#code(nonumber){{
# Name Version Build ...
_openmp_mutex 4.5 20_gnu ...
bzip2 1.0.8 hda65f42_9 ...
ca-certificates 2026.6.17 hbd8a1cb_0 ...
filelock 3.29.4 pypi_0 ...
fsspec 2026.6.0 pypi_0 ...
jinja2 3.1.6 pypi_0 ...
ld_impl_linux-64 2.45.1 default_hbd6...
libexpat 2.8.1 hecca717_1 ...
libffi 3.5.2 h3435931_0 ...
libgcc 15.2.0 he0feb66_19 ...
libgcc-ng 15.2.0 h69a702a_19 ...
libgomp 15.2.0 he0feb66_19 ...
liblzma 5.8.3 hb03c661_0 ...
libnsl 2.0.1 hb9d3cd8_1 ...
libsqlite 3.53.3 h0c1763c_0 ...
libuuid 2.42.2 h5347b49_0 ...
libxcrypt 4.4.36 hd590300_1 ...
libzlib 1.3.2 h25fd6f3_2 ...
markupsafe 3.0.3 pypi_0 ...
mpmath 1.3.0 pypi_0 ...
ncurses 6.6 hdb14827_0 ...
networkx 3.6.1 pypi_0 ...
nvidia-cublas-cu12 12.4.5.8 pypi_0 ...
nvidia-cuda-cupti-cu12 12.4.127 pypi_0 ...
nvidia-cuda-nvrtc-cu12 12.4.127 pypi_0 ...
nvidia-cuda-runtime-cu12 12.4.127 pypi_0 ...
nvidia-cudnn-cu12 9.1.0.70 pypi_0 ...
nvidia-cufft-cu12 11.2.1.3 pypi_0 ...
nvidia-curand-cu12 10.3.5.147 pypi_0 ...
nvidia-cusolver-cu12 11.6.1.9 pypi_0 ...
nvidia-cusparse-cu12 12.3.1.170 pypi_0 ...
nvidia-cusparselt-cu12 0.6.2 pypi_0 ...
nvidia-nccl-cu12 2.21.5 pypi_0 ...
nvidia-nvjitlink-cu12 12.4.127 pypi_0 ...
nvidia-nvtx-cu12 12.4.127 pypi_0 ...
openssl 3.6.3 h35e630c_0 ...
packaging 26.2 pyhc364b38_0...
pip 26.1.2 pyh8b19718_0...
python 3.11.15 h7508c33_1_c...
readline 8.3 h853b02a_0 ...
setuptools 82.0.1 pyh332efcf_0...
sympy 1.13.1 pypi_0 ...
tk 8.6.13 noxft_h366c9...
torch 2.6.0+cu124 pypi_0 ...
triton 3.2.0 pypi_0 ...
typing-extensions 4.16.0 pypi_0 ...
tzdata 2025c hc9c84f9_1 ...
wheel 0.47.0 pyhd8ed1ab_0...
zstd 1.5.7 hb78ec9c_6 ...
}}
#code(nonumber){{
pip install tardis-em
pip install napari-tardis-em
}}
***environment-modules [#s7a21bf6]
「/apps/modulefiles/TARDIS」
#code(nonumber){{
#%Module1.0
set root /apps/pyenv/versions/miniforge3-26.1.1-3/envs/TA...
prepend-path PATH $root/bin
prepend-path LD_LIBRARY_PATH $root/lib
}}
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