samtools

[root@centos7 ~]# cat /etc/redhat-release
CentOS Linux release 7.9.2009 (Core)
 
[root@centos7 ~]# yum install devtoolset-11 -y
 
[root@centos7 ~]# source scl_source enable devtoolset-11
 
[root@centos7 ~]# cd /apps/src/
[root@centos7 src]# git clone --recurse-submodules https://github.com/samtools/htslib
[root@centos7 src]# cd htslib/
[root@centos7 htslib]# autoreconf -i
[root@centos7 htslib]# ./configure --prefix=/apps/local
[root@centos7 htslib]# make -j 20 && make install

[root@centos7 ~]# cat /etc/redhat-release
CentOS Linux release 7.9.2009 (Core)
 
[root@centos7 ~]# 
 
[root@centos7 ~]# cd /apps/src/
 
[root@centos7 src]# git clone https://github.com/samtools/samtools
 
[root@centos7 src]# cd samtools/
 
[root@centos7 samtools]# autoheader
configure.ac:64: warning: AC_CONFIG_SUBDIRS: you should use literals
../../lib/autoconf/status.m4:1097: AC_CONFIG_SUBDIRS is expanded from...
m4/ax_with_htslib.m4:55: AX_WITH_HTSLIB is expanded from...
configure.ac:64: the top level
 
[root@centos7 samtools]# autoconf -Wno-syntax
 
[root@centos7 samtools]# ./configure --prefix=/apps/local
 
[root@centos7 samtools]# make -j 20 && make install
 
[root@centos7 samtools]# ls /apps/local/bin/
ace2sam       bowtie2sam.pl      interpolate_sam.pl  md5sum-lite         psl2sam.pl   seq_cache_populate.pl  wgsim_eval.pl
annot-tsv     export2sam.pl      maq2sam-long        novo2sam.pl         sam2vcf.pl   soap2sam.pl            zoom2sam.pl
bgzip         fasta-sanitize.pl  maq2sam-short       plot-ampliconstats  samtools     tabix
blast2sam.pl  htsfile            md5fa               plot-bamstats       samtools.pl  wgsim
 
[root@centos7 samtools]#