本家様http://www.ks.uiuc.edu/Research/vmd/
可視化アプリ、MDのトラジェクトリーを動画表示します.

[root@rockylinux9 ~]# cd /apps/src/
[root@rockylinux9 src]# tar xf /Public/em/vmd-2.0.1a1.bin.LINUXAMD64.tar.gz
[root@rockylinux9 src]# cd vmd-2.0.1a1/
[root@rockylinux9 vmd-2.0.1a1]# ls
Announcement bin configure configure.options data distrib doc lib LICENSE LINUXAMD64 msvc plugins proteins python README scripts shaders src
[root@rockylinux9 vmd-2.0.1a1]# vi configure
$install_bin_dir="/apps/vmd-2.0.1/bin";
$install_library_dir="/apps/vmd-2.0.1/lib/$install_name";
[root@rockylinux9 vmd-2.0.1a1]#
[root@rockylinux9 vmd-2.0.1a1]# ./configure
[root@rockylinux9 vmd-2.0.1a1]# cd src/
[root@rockylinux9 src]# make install
Info: /bin/csh shell not found, installing Bourne shell startup script instead
Make sure /apps/vmd-2.0.1/bin/vmd is in your path.
VMD installation complete. Enjoy!
[root@rockylinux9 src]#environment-modules
「/apps/modulefiles/vmd/2.0.1」
#%Module1.0
set root /apps/vmd-2.0.1
prepend-path PATH $root/bin
prepend-path LD_LIBRARY_PATH $root/lib操作パネル


[root@rockylinux9 ~]# cd /apps/src/
[root@rockylinux9 src]# tar xf /Public/em/vmd-2.0.0.bin.LINUXAMD64.tar.gz
[root@rockylinux9 src]# cd vmd-2.0.0/
[root@rockylinux9 vmd-2.0.0]# vi configure
$install_bin_dir="/apps/vmd-2.0.0/bin";
$install_library_dir="/apps/vmd-2.0.0/lib/$install_name";
[root@rockylinux9 vmd-2.0.0]#
[root@rockylinux9 vmd-2.0.0]# ./configure
[root@rockylinux9 vmd-2.0.0]# cd src/
[root@rockylinux9 src]# make install
Info: /bin/csh shell not found, installing Bourne shell startup script instead
Make sure /apps/vmd-2.0.0/bin/vmd is in your path.
VMD installation complete. Enjoy!
[root@rockylinux9 src]#environment-modules
「/apps/modulefiles/vmd/2.0.0」
#%Module1.0
set root /apps/vmd-2.0.0
prepend-path PATH $root/bin
prepend-path LD_LIBRARY_PATH $root/lib
prepend-path LD_LIBRARY_PATH $root/lib/vmd
# VMD bundled SQLite is incompatible with Rocky Linux 9 tracker-sparql.
# Force the system SQLite to be loaded first.
prepend-path LD_PRELOAD /lib64/libsqlite3.so.0操作パネル. v1.9.3から大きく変わった

Version 1.9.3版
https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD

このうち、「LINUX_64 OpenGL, CUDA, OptiX, OSPRay」をクリックして「vmd-1.9.3.bin.LINUXAMD64-CUDA8-OptiX4-OSPRay111p1.opengl.tar.gz」(64MB)を取得しました
[root@rockylinux9 ~]# cd /apps/src/
[root@rockylinux9 src]# tar xf /Public/em/vmd-1.9.3.bin.LINUXAMD64-CUDA8-OptiX4-OSPRay111p1.opengl.tar.gz
[root@rockylinux9 src]# cd vmd-1.9.3/
[root@rockylinux9 vmd-1.9.3]# ls
Announcement bin configure configure.options data distrib doc lib LICENSE LINUXAMD64 msvc plugins proteins python README scripts shaders src
[root@rockylinux9 vmd-1.9.3]# vi configure
- $install_bin_dir="/usr/local/bin";
+ $install_bin_dir="/apps/vmd-1.9.3/bin";
- $install_library_dir="/usr/local/lib/$install_name";
+ $install_library_dir="/apps/vmd-1.9.3/lib";
[root@rockylinux9 vmd-1.9.3]# ./configure
using configure.options: LINUXAMD64 OPENGL OPENGLPBUFFER FLTK TK ACTC CUDA IMD LIBSBALL
XINERAMA XINPUT LIBOPTIX LIBOSPRAY LIBTACHYON VRPN NETCDF COLVARS TCL PYTHON PTHREADS NUMPY SILENT ICC
[root@rockylinux9 vmd-1.9.3]# cd src/
[root@rockylinux9 src]# make install
Info: /bin/csh shell not found, installing Bourne shell startup script instead
Make sure /apps/vmd-1.9.3/bin/vmd is in your path.
VMD installation complete. Enjoy!
[root@rockylinux9 src]#これでインストールは完了。
environment-modules
「/apps/modulefiles/vmd/1.9.3」
#%Module1.0
set root /apps/vmd-1.9.3
prepend-path PATH $root/bin
prepend-path LD_LIBRARY_PATH $root/lib