本家様http://www.ks.uiuc.edu/Research/vmd/

可視化アプリ、MDのトラジェクトリーを動画表示します.

vmd-2.0.1

2026y08m15d_213357648.png

[root@rockylinux9 ~]# cd /apps/src/
[root@rockylinux9 src]# tar xf /Public/em/vmd-2.0.1a1.bin.LINUXAMD64.tar.gz
[root@rockylinux9 src]# cd vmd-2.0.1a1/
[root@rockylinux9 vmd-2.0.1a1]# ls
Announcement  bin  configure  configure.options  data  distrib  doc  lib  LICENSE  LINUXAMD64  msvc  plugins  proteins  python  README  scripts  shaders  src
 
[root@rockylinux9 vmd-2.0.1a1]# vi configure
$install_bin_dir="/apps/vmd-2.0.1/bin";
 
$install_library_dir="/apps/vmd-2.0.1/lib/$install_name";
 
[root@rockylinux9 vmd-2.0.1a1]# 
[root@rockylinux9 vmd-2.0.1a1]# ./configure
[root@rockylinux9 vmd-2.0.1a1]# cd src/
[root@rockylinux9 src]# make install
Info: /bin/csh shell not found, installing Bourne shell startup script instead
Make sure /apps/vmd-2.0.1/bin/vmd is in your path.
VMD installation complete.  Enjoy!
 
[root@rockylinux9 src]#

environment-modules
「/apps/modulefiles/vmd/2.0.1」

#%Module1.0
set          root       /apps/vmd-2.0.1
 
prepend-path PATH       $root/bin
prepend-path LD_LIBRARY_PATH $root/lib

操作パネル
2026y08m15d_213659621.png

vmd-2.0.0

2026y08m15d_213850276.png

[root@rockylinux9 ~]# cd /apps/src/
[root@rockylinux9 src]# tar xf /Public/em/vmd-2.0.0.bin.LINUXAMD64.tar.gz
[root@rockylinux9 src]# cd vmd-2.0.0/
[root@rockylinux9 vmd-2.0.0]# vi configure
$install_bin_dir="/apps/vmd-2.0.0/bin";
 
$install_library_dir="/apps/vmd-2.0.0/lib/$install_name";
[root@rockylinux9 vmd-2.0.0]#
[root@rockylinux9 vmd-2.0.0]# ./configure
[root@rockylinux9 vmd-2.0.0]# cd src/
[root@rockylinux9 src]# make install
Info: /bin/csh shell not found, installing Bourne shell startup script instead
Make sure /apps/vmd-2.0.0/bin/vmd is in your path.
VMD installation complete.  Enjoy!
[root@rockylinux9 src]#

environment-modules
「/apps/modulefiles/vmd/2.0.0」

#%Module1.0
 
set root /apps/vmd-2.0.0
 
prepend-path PATH            $root/bin
prepend-path LD_LIBRARY_PATH $root/lib
prepend-path LD_LIBRARY_PATH $root/lib/vmd
 
# VMD bundled SQLite is incompatible with Rocky Linux 9 tracker-sparql.
# Force the system SQLite to be loaded first.
prepend-path LD_PRELOAD /lib64/libsqlite3.so.0

操作パネル. v1.9.3から大きく変わった
2026y08m15d_214658061.png

vmd-1.9.3

Version 1.9.3版
https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD
2026y08m15d_211627127.png

このうち、「LINUX_64 OpenGL, CUDA, OptiX, OSPRay」をクリックして「vmd-1.9.3.bin.LINUXAMD64-CUDA8-OptiX4-OSPRay111p1.opengl.tar.gz」(64MB)を取得しました

[root@rockylinux9 ~]# cd /apps/src/
[root@rockylinux9 src]# tar xf /Public/em/vmd-1.9.3.bin.LINUXAMD64-CUDA8-OptiX4-OSPRay111p1.opengl.tar.gz
[root@rockylinux9 src]# cd vmd-1.9.3/
[root@rockylinux9 vmd-1.9.3]# ls
Announcement  bin  configure  configure.options  data  distrib  doc  lib  LICENSE  LINUXAMD64  msvc  plugins  proteins  python  README  scripts  shaders  src
 
[root@rockylinux9 vmd-1.9.3]# vi configure
- $install_bin_dir="/usr/local/bin";
+ $install_bin_dir="/apps/vmd-1.9.3/bin";
 
- $install_library_dir="/usr/local/lib/$install_name";
+ $install_library_dir="/apps/vmd-1.9.3/lib";
 
[root@rockylinux9 vmd-1.9.3]# ./configure
using configure.options: LINUXAMD64 OPENGL OPENGLPBUFFER FLTK TK ACTC CUDA IMD LIBSBALL 
XINERAMA XINPUT LIBOPTIX LIBOSPRAY LIBTACHYON VRPN NETCDF COLVARS TCL PYTHON PTHREADS NUMPY SILENT ICC
 
[root@rockylinux9 vmd-1.9.3]# cd src/
 
[root@rockylinux9 src]# make install
Info: /bin/csh shell not found, installing Bourne shell startup script instead
Make sure /apps/vmd-1.9.3/bin/vmd is in your path.
VMD installation complete.  Enjoy!
 
[root@rockylinux9 src]#

これでインストールは完了。

environment-modules
「/apps/modulefiles/vmd/1.9.3」

#%Module1.0
set          root       /apps/vmd-1.9.3
 
prepend-path PATH       $root/bin
prepend-path LD_LIBRARY_PATH $root/lib
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Last-modified: 2026-08-15 (土) 22:13:55