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2013.10.11¤Ë ccp4 6.4.0¤¬¥ê¥ê¡¼¥¹¤µ¤ì¤¿¡£¥ê¥ê¡¼¥¹¥Î¡¼¥È¤Ï¤³¤Á¤é
Linux/MacOSX¤Ë¤Ï¥Ñ¥Ã¥±¡¼¥¸¥Þ¥Í¡¼¥¸¥ã¤¬Ä󶡤µ¤ì¡¢¤½¤ì¤ò»È¤¨¤ÐÍÆ°×¤Ë¥¤¥ó¥¹¥È¡¼¥ë¤Ï²Äǽ¡£
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ºÇ¾®¹½À®¥Þ¥·¥ó¤Ë
[root@c132 ~]# yum groupinstall "X Window System" Desktop "Japanese Support" "Java Platform"
[root@c132 ~]# yum -y install firefox tcsh wget mesa-libGLU graphviz
[root@c132 ~]# vi /etc/inittab
(ÃæÎ¬)
id:5:initdefault:
[root@c132 ~]#
[root@c132 ~]# reboot
¤È¤·¤Æ¾´Ä¶¤òºîÀ®¤·¤Æ¡¢ccp4i¤Î¥Ñ¥Ã¥±¡¼¥¸¥Þ¥Í¡¼¥¸¥ã¤ò¥À¥¦¥ó¥í¡¼¥É¤·¤Þ¤¹¡£
URL http://www.ccp4.ac.uk/download/index.php#os=linux ¤Ë¥¢¥¯¥»¥¹¤·¤Æ¡¢[Download Now!]¥ê¥ó¥¯¤ò¥¯¥ê¥Ã¥¯¤·¤Þ¤¹¡£

¥À¥¦¥ó¥í¡¼¥É¤·¤¿¥Õ¥¡¥¤¥ë¤Ï¡¢³Æ¼«¤Î[¥À¥¦¥ó¥í¡¼¥É]¥Ç¥£¥ì¥¯¥È¥ê¡¼¤ËÃÖ¤«¤ì¤ë¡£
¼¡¤Ë[üËö]¤ò¶î»È¤·¤Æ¡¢/Appl/Linux/src¤òºîÀ®¤·¤Æ¡¢¤½¤³¤Ç¤³¤Î¥Õ¥¡¥¤¥ë¤ò²òÅह¤ë¡£
[root@c132 ~]# mkdir -p /Appl/Linux/src
[root@c132 ~]# cp ~/¥À¥¦¥ó¥í¡¼¥É/ccp4sm-x86_64.tar.gz /Appl/Linux/src/
[root@c132 ~]# cd /Appl/Linux/src
[root@c132 src]# gzip -cd ccp4sm-x86_64.tar.gz | tar xf -
[root@c132 src]# ls -l
¹ç·× 11984
-rwxrwxr-x 1 500 500 6180088 10·î 10 20:47 2013 ccp4sm
-rw-r--r-- 1 root root 6090050 12·î 1 13:49 2013 ccp4sm-x86_64.tar.gz
[root@c132 src]#
¤Ç¤¤¿ccp4sm¤òµ¯Æ°¤µ¤»¤ë¡£
[root@c132 src]# ./ccp4sm
¤¹¤ë¤ÈCCP4 Setup Manager¤¬µ¯Æ°¤¹¤ë¡£[Next]¥Ü¥¿¥ó¤ò¥¯¥ê¥Ã¥¯

¡ÖCCP4 6.4.0 setup, step 1 out of 5¡¢Choose components to install¡× ²èÌ̤ǥ¤¥ó¥¹¥È¡¼¥ë¤·¤¿¤¤¥Ñ¥Ã¥±¡¼¥¸¤òÁªÂò¤·¤Þ¤¹¡£¤¹¤Ù¤ÆÁªÂò¤¹¤ë¤È6.4GBɬÍפǤ¹¡£¤³¤³¤Ç¤ÏCCP4ËÜÂΤÈARP/wARP¤ò¥¤¥ó¥¹¥È¡¼¥ë¤·¤Þ¤¹¡£

¡ÖCCP4 6.4.0 setup, step 2.a out of 5¡¢Confirm your agreement to CCP4 terms and Conditions¡×²èÌ̤ǥ饤¥»¥ó¥¹¤òÇÒÆÉ¤·¤Æ¡¢Æ±°Õ¤¹¤ë¤«¡¢¤·¤Ê¤¤¤«¤ò·è¤á¤Þ¤¹¡£Æ±°Õ¤¹¤ë¤Î¤Ê¤é¡¢[I agree]¤òÁªÂò¤·¤Æ[Next]¥Ü¥¿¥ó¤ò¥¯¥ê¥Ã¥¯¤·¤Þ¤¹¡£

¡ÖCCP4 6.4.0 setup, step 2.b out of 5¡¢Confirm your agreement to GPL terms and conditions for Coot installation¡×²èÌ̤ǥ饤¥»¥ó¥¹¤òÇÒÆÉ¤·¤Æ¡¢Æ±°Õ¤¹¤ë¤«¡¢¤·¤Ê¤¤¤«¤ò·è¤á¤Þ¤¹¡£Æ±°Õ¤¹¤ë¤Î¤Ê¤é¡¢[I agree]¤òÁªÂò¤·¤Æ[Next]¥Ü¥¿¥ó¤ò¥¯¥ê¥Ã¥¯¤·¤Þ¤¹¡£

¡ÖCCP4 6.4.0 setup, step 2.c out of 5¡¢Confirm ARP/wARP Licence¡×²èÌ̤ǥ饤¥»¥ó¥¹¤òÇÒÆÉ¤·¤Æ¡¢Æ±°Õ¤¹¤ë¤«¡¢¤·¤Ê¤¤¤«¤ò·è¤á¤Þ¤¹¡£Æ±°Õ¤¹¤ë¤Î¤Ê¤é¡¢»á̾¤È¥á¡¼¥ë¥¢¥É¥ì¥¹¡¢¤ª¤è¤Ó¥é¥¤¥»¥ó¥¹¤Î¥¿¥¤¥×¤òÁªÂò¤·¤Æ[Next]¥Ü¥¿¥ó¤ò¥¯¥ê¥Ã¥¯¤·¤Þ¤¹¡£

¡ÖCCP4 6.4.0 setup, step 3 out of 5¡¢Choose Locations¡×²èÌ̤ǡ¢CCP4(¤ÈARP/wARP)¤òÇÛÃÖ¤¹¤ë¾ì½ê¤È¥À¥¦¥ó¥í¡¼¥É¥Õ¥¡¥¤¥ë¤òÃÖ¤¯¾ì½ê¤ò·è¤á¤ë¡£¤³¤³¤Ç¤Ï/Appl/Linux¤òµ¯ÅÀ¤È¤·¤¿¡£[Next]¥Ü¥¿¥ó¤Ç¥À¥¦¥ó¥í¡¼¥É¤¬³«»Ï¤µ¤ì¤ë

¡ÖCCP4 6.4.0 setup, step 4 out of 5¡¢Download selected components¡×²èÌ̤ǥÀ¥¦¥ó¥í¡¼¥É¾õ¶·¤¬¸«¤¨¤ë¡£

¥À¥¦¥ó¥í¡¼¥É´°Î»¸å¡¢[Next]¥Ü¥¿¥ó¤ò²¡¤¹¡£

¡ÖCCP4 6.4.0 setup, step 5 out of 5¡¢Install downloaded components¡×²èÌ̤ǡÖReady to install¡×¤ò³Îǧ¤·¤Æ[Install]¥Ü¥¿¥ó¤ò²¡¤¹¡£¤³¤ì¤Ç¥¤¥ó¥¹¥È¡¼¥ë¤¬³«»Ï¤µ¤ì¤ë¡£

ÅÓÃæ¡¢update¤¬¤¢¤ë¤«¤òÄ´¤Ù¡¢¤¢¤Ã¤¿¤é¼«Æ°¤Ç¥À¥¦¥ó¥í¡¼¥É¤ÈŬÍѤ¬¹Ô¤ï¤ì¤ë¡£

¤½¤·¤Æ¡¢¥¤¥ó¥¹¥È¡¼¥ë¤Ï´°Î»¤È¤Ê¤ë¡£

ÇÛÃÖ †
/Appl/Linux¤òµ¯ÅÀ¤Ë¥¤¥ó¥¹¥È¡¼¥ë¤¹¤ë¤È¡¢²¼µ¤Î¤è¤¦¤ËÇÛÃÖ¤µ¤ì¤ë
[root@c132 Linux]# pwd
/Appl/Linux
[root@c132 Linux]# ls -l
¹ç·× 1140
drwxr-xr-x 6 root root 4096 12·î 1 15:03 2013 arp_warp_7.4
drwxr-xr-x 13 root root 4096 12·î 1 15:02 2013 ccp4-6.4.0
-rw-r--r-- 1 root root 1152413 12·î 1 15:03 2013 install.log *ccp4¤Î¥¤¥ó¥¹¥È¡¼¥ë¥í¥°
drwxr-xr-x 3 root root 4096 12·î 1 14:13 2013 src
[root@c132 Linux]#
[root@c132 Linux]# mv install.log ccp4-640.install.log *¥Õ¥¡¥¤¥ë̾¤òÊѹ¹
´Ä¶ÊÑ¿ô †
ccp4¤ò»ÈÍѤ¹¤ë¤Ë¤Ï³Æ¼ï´Ä¶ÊÑ¿ô¤ÎÁȤ߹þ¤ß¤¬É¬Íס£
- bash¤Ê¤é~/.bashrc¤Ë
source /Appl/Linux/ccp4-6.4.0/bin/ccp4.setup-sh
- csh¤Ê¤é~/.cshrc¤Ë
source /Appl/Linux/ccp4-6.4.0/bin/ccp4.setup-csh
¤òÄɲ乤롣
¤¢¤È¡¢fasta¤âɬÍפʤΤǡ¢/Appl/Linux/fasta/bin¤òPATH´Ä¶ÊÑ¿ô¤Ë²Ã¤¨¤ë
ÉÔ¶ñ¹ç †
Pirate¤òµ¯Æ°¤·¤è¤¦¤È¤¹¤ë¤È¥¨¥é¡¼¤¬È¯À¸¤¹¤ë¡£root¤Ç¼Â¹Ô¤¹¤ë¤ÈȯÀ¸¤·¤Ê¤¤¡£

AutoSHARP¤È¤ÎÏ¢·È †
*USF/MAPMAN¤Ï¤³¤³¤ò»²¾È
[root@s ~]# mkdir /Appl/Linux/sharp; cd /Appl/Linux/sharp
[root@s sharp]#
[root@s sharp]# touch .licence *ȯ¹Ô¸µ¤«¤é¼èÆÀ¤¹¤ë»ö
[root@s sharp]#
[root@s sharp]# gtar xvf ../src/GPhL_SHARP.linux.tar sharp.linux.tar.gz sushi.tar.gz
sharp.linux.tar.gz
sushi.tar.gz
[root@s sharp]#
[root@s sharp]# gzip -cd sushi.tar.gz | tar xf - bin
[root@s sharp]# mkdir -p bin/linux_exe
[root@s sharp]# cd bin/linux_exe
[root@s linux_exe]# gzip -cd ../../sharp.linux.tar.gz | tar xf -
³Æ¼«¤Î¥æ¡¼¥¶´Ä¶ÀßÄê¤Ë
[foo@s ~]$ export BDG_home=/Appl/Linux/sharp
¤òÁȤ߹þ¤ß¤à»ö¡©
¤³¤³¤ò»²¾ÈAutoSHARP
¥Æ¥¹¥È¤È¤·¤Æ
ccp4i -t autoSHARP
¤ò¹Ô¤¨¤Ðµ¹¤·¤¤¤Î¤«¤â¡£
chooch †
[root@s ~]# cd /Appl/Linux/src
[root@s ~]# wget ftp://ftp.riken.jp/GNU/gnu/gsl/gsl-1.16.tar.gz
[root@s src]# gzip -cd gsl-1.16.tar.gz | tar xf -
[root@s src]# cd gsl-1.16
[root@s gsl-1.16]#
[root@s gsl-1.16]# ./configure --prefix=/Appl/Linux/local
[root@s gsl-1.16]# make; make check; make install
[root@s gsl-1.16]#
[root@s ~]# cd /Appl/Linux/src
[root@s src]# gzip -cd ccp4-6.4.0-chooch-src.tar.gz | tar xf -
[root@s src]# cd chooch/cgraph-2.04
[root@s cgraph-2.04]# ./configure --prefix=/Appl/Linux/local
[root@s cgraph-2.04]# make; make install
[root@s ~]# cd /Appl/Linux/src
[root@s src]# cd chooch/chooch-5.0.2
[root@s chooch-5.0.2]# ./configure --with-gsl-prefix=/Appl/Linux/local --with-cgraph-prefix=/Appl/Linux/local \
--prefix=/Appl/Linux/local
[root@s chooch-5.0.2]# make; make install